Key Takeaways
- Spinal Muscular Atrophy (SMA) affects approximately 1 in 10,000 live births globally, with type 1 being the most severe form accounting for 60% of cases.
- In the United States, the carrier frequency for SMA is about 1 in 50 individuals in the general population.
- SMA type 2 incidence is estimated at 1 in 25,000 to 1 in 40,000 live births, often presenting symptoms between 6-18 months.
- SMA is caused by mutations in the SMN1 gene on chromosome 5q13, with homozygous deletion in 95% of patients.
- Over 98% of SMA cases result from absence of exon 7 in SMN1, leading to reduced SMN protein levels.
- SMN2 gene copy number inversely correlates with severity: type 1 patients typically have 2 copies, type 3 have 3-4.
- Prenatal SMA diagnosis via CVS detects SMN1 deletion in 97% sensitivity from week 10.
- Newborn screening for SMA using DBS cards identifies 1 in 10,000 positives with 100% specificity.
- EMG shows denervation patterns in 90% of SMA type 1 infants by 3 months.
- Nusinersen treatment increases SMN protein by 50-100% in 70% of SMA type 1 patients after 4 doses.
- Onasemnogene abeparvovec (Zolgensma) one-time infusion improves motor function in 91% of treated infants.
- Risdiplam oral therapy boosts SMN levels by 2-3 fold in 80% of type 2/3 patients over 12 months.
- Without treatment, 68% of SMA type 1 die by 2 years; with Spinraza, survival >90% at 13 months.
- SMA type 2 patients achieve independent walking in 10-20%, but 80% lose ambulation by adulthood.
- Median survival for untreated type 1 SMA is 6.9 months; ventilator use extends to 29.1 months.
SMA is a rare genetic disease, but new treatments dramatically improve patient survival.
Diagnosis
- Prenatal SMA diagnosis via CVS detects SMN1 deletion in 97% sensitivity from week 10.
- Newborn screening for SMA using DBS cards identifies 1 in 10,000 positives with 100% specificity.
- EMG shows denervation patterns in 90% of SMA type 1 infants by 3 months.
- CK levels are normal or mildly elevated (<500 U/L) in 85% of SMA patients, aiding differentiation.
- MRI of spinal cord reveals anterior horn cell loss in 70% of advanced SMA type 2 cases.
- Genetic confirmation via qPCR for SMN1 exon 7/8 detects 99% of carriers.
- CHOP INT score at birth predicts SMA type 1 mortality with 92% accuracy.
- Hammersmith Functional Motor Scale (HFMS) scores <20 indicate type 2 SMA in 88% cases.
- SMN protein quantification in blood <2 ng/mg correlates with type 1 in 95% sensitivity.
- MLPA detects SMN2 copy number with 98% concordance across 1,000+ patient cohorts.
- ASO-based newborn screening achieves 99% PPV for SMA.
- Nerve conduction velocity normal in 95% SMA, vs reduced in neuropathies.
- Children's Hospital of Philadelphia Infant Test (CHOP-INTEND) >40 scores rule out type 1 in 90%.
- SMN1 dosage analysis by ddPCR sensitivity 100% for carriers.
- Brain MRI T2 hyperintensity in anterior horns seen in 60% type 1.
- HFMSE score progression differentiates SMA from myopathies in 85%.
- Dried blood spot SMN RT-qPCR detects type 1 in 24 hours with 98% accuracy.
- Ultrasound tongue fasciculations present in 75% symptomatic neonates.
- Next-gen sequencing panels identify 2% novel SMN variants.
Diagnosis Interpretation
Epidemiology
- Spinal Muscular Atrophy (SMA) affects approximately 1 in 10,000 live births globally, with type 1 being the most severe form accounting for 60% of cases.
- In the United States, the carrier frequency for SMA is about 1 in 50 individuals in the general population.
- SMA type 2 incidence is estimated at 1 in 25,000 to 1 in 40,000 live births, often presenting symptoms between 6-18 months.
- Approximately 30% of SMA patients are classified as type 3, with onset after 18 months and milder progression.
- Global SMA prevalence is around 5-10 per 100,000 individuals, varying by ethnicity with higher rates in Caucasians.
- In Europe, SMA carrier screening identifies 1 in 35-50 carriers, influencing preconception counseling rates.
- SMA type 0, the rarest prenatal form, occurs in less than 5% of cases with incidence under 1 in 100,000.
- Australia reports SMA incidence of 1 in 9,000 live births, with newborn screening detecting 95% of cases early.
- In Asia, SMA prevalence is lower at 1 in 15,000-20,000, attributed to genetic founder effects.
- U.S. data shows 400-500 new SMA diagnoses annually, with 1 in 40-60 carrier rate among non-Hispanic whites.
- SMA type 1 untreated: 100% ventilator dependence by 10 months; treated: 26% at 14 months.
- Carrier frequency in African Americans is 1 in 66, lower than 1 in 35 for Caucasians.
- SMA type 4, adult-onset, affects <1% with incidence 1 in 300,000.
- Brazil reports 1 in 8,000 SMA incidence, highest in South America.
- Consanguinity increases SMA risk 10-fold in high-prevalence regions like North Africa.
- U.K. newborn screening pilot detected 100% of SMA cases in 20,000 births.
Epidemiology Interpretation
Genetics
- SMA is caused by mutations in the SMN1 gene on chromosome 5q13, with homozygous deletion in 95% of patients.
- Over 98% of SMA cases result from absence of exon 7 in SMN1, leading to reduced SMN protein levels.
- SMN2 gene copy number inversely correlates with severity: type 1 patients typically have 2 copies, type 3 have 3-4.
- De novo mutations in SMN1 account for only 2-5% of SMA cases, most are inherited autosomal recessively.
- Intragenic SMN1 mutations occur in 5% of patients, including point mutations like c.859C>T.
- SMN2 modifier genes influence 10-20% of phenotypic variability beyond copy number.
- Rare SMN1 duplications lead to 3+ copies in 5-10% of carriers, complicating genetic counseling.
- Plastin 3 (PLS3) gene overexpression rescues SMA phenotype in 10% of type 3 cases.
- NAIP gene deletion correlates with type 1 severity in 45% of homozygous SMN1 deletion patients.
- Biallelic SMN1 deletions confirmed via MLPA in 96% accuracy across labs worldwide.
- SMN1 gene spans 27 kb with 9 exons, deletions span 40-500 kb typically.
- SMN2 produces 10% functional protein due to exon 7 skipping in 90% transcripts.
- 2 SMN2 copies predict type 1 SMA severity in 92% of infants.
- Compound heterozygotes (deletion + point mutation) comprise 5% of cases.
- H4F5 promoter methylation affects SMN2 expression in 15% variability.
- Rare VAPB mutations modifier in 2% of familial SMA clusters.
- SMN1 hybridization probes detect 99.5% deletions via MLPA.
- Corin gene variants rescue mild phenotypes in 8% type 3 cases.
- Non-SMN1 genes like UBA1 implicated in 3% atypical SMA.
Genetics Interpretation
Prognosis
- Without treatment, 68% of SMA type 1 die by 2 years; with Spinraza, survival >90% at 13 months.
- SMA type 2 patients achieve independent walking in 10-20%, but 80% lose ambulation by adulthood.
- Median survival for untreated type 1 SMA is 6.9 months; ventilator use extends to 29.1 months.
- Type 3 SMA life expectancy nears normal, with 95% survival to age 30 if ambulatory.
- Post-Zolgensma, 59% of type 1 infants sit independently at 14 months vs 0% untreated.
- Scoliosis develops in 90% of non-ambulatory SMA type 2 by age 10.
- HFMS decline rate in type 2 is 0.15 points/month untreated, slowed to 0.03 with therapy.
- Respiratory failure causes 95% of deaths in SMA type 1 before age 2 without intervention.
- Long-term Spinraza data shows 85% event-free survival at 5 years in treated cohorts.
- Treated type 1 SMA survival 100% at 23 months vs 26% untreated.
- Type 2 SMA: 30% retain ambulation to age 30 with support.
- Gene therapy cohort: 92% ventilator-free at 18 months post-dose.
- Untreated type 3: 70% wheelchair by 40 years.
- Post-nusinersen, 44% type 1 achieve head control vs 0%.
- Kyphosis >50° predicts respiratory decline in 75% non-walkers.
- Risdiplam: 80% stable/reduced FVC decline in type 2.
- Historical type 1 median survival 7.1 months; modern care 36 months.
Prognosis Interpretation
Treatment
- Nusinersen treatment increases SMN protein by 50-100% in 70% of SMA type 1 patients after 4 doses.
- Onasemnogene abeparvovec (Zolgensma) one-time infusion improves motor function in 91% of treated infants.
- Risdiplam oral therapy boosts SMN levels by 2-3 fold in 80% of type 2/3 patients over 12 months.
- Ventilatory support extends survival in untreated type 1 SMA from 2 years to over 10 years in 60% cases.
- Scoliosis surgery in type 3 SMA stabilizes spine in 85% with <10% complication rate.
- Spinraza intrathecal injections every 4 months maintain HFMSE gains in 75% type 2 patients.
- Gene therapy Zolgensma reduces hospitalization by 80% vs historical controls in type 1.
- Physical therapy improves CHOP INT scores by 15 points in 65% of early intervened type 2.
- Risdiplam FIREFISH trial shows 41% of type 1 infants sitting unsupported vs 0% placebo.
- Nusinersen phase 3 ENDEAR trial: 57% motor milestone achievement vs 0% sham.
- Zolgensma reduces death/hypotonia by 94% at 14 months in SPR1NT trial.
- Risdiplam SUNFISH: 1.36 point HFMSE gain in type 2/3 over 12 months.
- NIV use decreases pneumonia incidence by 50% in type 2 SMA.
- Posterior spinal fusion reduces Cobb angle progression to <5°/year in 80%.
- SHINE trial: Nusinersen sustains motor gains in 70% presymptomatic.
- Cardiac glycosides adjunct improve contractures in 40% type 3.
- Early PT/OT increases sitting duration by 2x in type 2 at 2 years.
- Apitegromab phase 2: +5.6 HFMSE points in Spinraza combo.
Treatment Interpretation
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