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Healthcare Medicine

Top 10 Best Medicaid Software of 2026

Discover the top 10 Medicaid software solutions. Compare features, find the perfect fit – optimize your practice today!

Rajesh Patel

Rajesh Patel

Feb 11, 2026

10 tools comparedExpert reviewed
Independent evaluation · Unbiased commentary · Updated regularly
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Medicaid software is essential for navigating complex billing, eligibility, and care management workflows, with the right tools directly impacting efficiency and compliance. This curated list highlights leading solutions, from EHR platforms to administrative systems, to help providers, agencies, and payers optimize performance.

Quick Overview

  1. 1#1: Epic Systems - Comprehensive EHR platform with advanced Medicaid billing, eligibility verification, and claims management for providers.
  2. 2#2: Oracle Cerner - Integrated health IT suite offering robust Medicaid revenue cycle management and interoperability features.
  3. 3#3: athenahealth - Cloud-based EHR and practice management software optimized for Medicaid claims processing and compliance.
  4. 4#4: Gainwell Technologies - Medicaid Management Information System (MMIS) for state agencies handling enrollment, adjudication, and reporting.
  5. 5#5: Conduent - End-to-end Medicaid administration platform supporting claims, provider networks, and program integrity.
  6. 6#6: Optum - Analytics-driven solutions for Medicaid payers including claims processing and population health management.
  7. 7#7: eClinicalWorks - EHR and revenue cycle management tool with strong Medicaid billing and telehealth integration.
  8. 8#8: NextGen Healthcare - Ambulatory EHR system featuring Medicaid-specific interoperability and practice management capabilities.
  9. 9#9: ZeOmega - Care management platform tailored for Medicaid managed care organizations with utilization and prior auth tools.
  10. 10#10: HealthEdge - Modern core administrative processing system for Medicaid payers focusing on claims and member management.

Tools were ranked based on depth of Medicaid-specific features, user experience, reliability, and value, ensuring relevance for diverse organizational needs in today’s healthcare environment.

Comparison Table

This comparison table explores key Medicaid software tools, including Epic Systems, Oracle Cerner, athenahealth, Gainwell Technologies, Conduent, and more, to assist readers in assessing options for their specific program needs. By examining features, integration strengths, and scalability, it offers insights to identify the most suitable solution for managing Medicaid services effectively.

Comprehensive EHR platform with advanced Medicaid billing, eligibility verification, and claims management for providers.

Features
9.8/10
Ease
7.2/10
Value
8.6/10

Integrated health IT suite offering robust Medicaid revenue cycle management and interoperability features.

Features
9.5/10
Ease
7.8/10
Value
8.4/10

Cloud-based EHR and practice management software optimized for Medicaid claims processing and compliance.

Features
9.2/10
Ease
8.1/10
Value
8.3/10

Medicaid Management Information System (MMIS) for state agencies handling enrollment, adjudication, and reporting.

Features
9.2/10
Ease
7.4/10
Value
8.1/10
5Conduent logo7.8/10

End-to-end Medicaid administration platform supporting claims, provider networks, and program integrity.

Features
8.3/10
Ease
6.9/10
Value
7.4/10
6Optum logo8.4/10

Analytics-driven solutions for Medicaid payers including claims processing and population health management.

Features
9.1/10
Ease
7.6/10
Value
8.0/10

EHR and revenue cycle management tool with strong Medicaid billing and telehealth integration.

Features
8.2/10
Ease
6.9/10
Value
7.5/10

Ambulatory EHR system featuring Medicaid-specific interoperability and practice management capabilities.

Features
8.5/10
Ease
7.4/10
Value
7.8/10
9ZeOmega logo8.2/10

Care management platform tailored for Medicaid managed care organizations with utilization and prior auth tools.

Features
8.7/10
Ease
7.4/10
Value
7.9/10
10HealthEdge logo8.1/10

Modern core administrative processing system for Medicaid payers focusing on claims and member management.

Features
8.5/10
Ease
7.5/10
Value
7.8/10
1
Epic Systems logo

Epic Systems

enterprise

Comprehensive EHR platform with advanced Medicaid billing, eligibility verification, and claims management for providers.

Overall Rating9.4/10
Features
9.8/10
Ease of Use
7.2/10
Value
8.6/10
Standout Feature

Epic Payer Platform for unified Medicaid claims adjudication, enrollment, and real-time eligibility across a single patient database

Epic Systems offers a comprehensive EHR platform with robust Medicaid-specific capabilities, including real-time eligibility verification, claims management, enrollment processing, and compliance reporting through modules like Healthy Planet and the Payer Platform. It integrates seamlessly with clinical workflows to support population health management for Medicaid beneficiaries, enabling value-based care and risk stratification. Designed for large-scale deployment, it handles high-volume Medicaid claims and prior authorizations efficiently while ensuring regulatory compliance across states.

Pros

  • Unmatched integration of clinical, financial, and payer functions for end-to-end Medicaid management
  • Advanced analytics and population health tools tailored for Medicaid value-based contracts
  • Proven scalability and interoperability with state Medicaid systems nationwide

Cons

  • Steep learning curve and extensive training required for users
  • Prolonged implementation timelines often exceeding 2-3 years
  • High customization costs can strain smaller organizations

Best For

Large hospitals, health systems, and Medicaid managed care organizations handling millions of beneficiaries.

Pricing

Custom enterprise licensing starting at $1-10M+ annually based on size, users, and modules; no public pricing.

2
Oracle Cerner logo

Oracle Cerner

enterprise

Integrated health IT suite offering robust Medicaid revenue cycle management and interoperability features.

Overall Rating9.1/10
Features
9.5/10
Ease of Use
7.8/10
Value
8.4/10
Standout Feature

HealtheIntent platform for community-wide, real-time population health data aggregation and predictive analytics tailored to Medicaid enrollee needs

Oracle Cerner, now part of Oracle Health, offers a robust electronic health record (EHR) platform with specialized modules for Medicaid management, including enrollment, eligibility checks, claims processing, and care coordination. Its HealtheIntent population health platform enables real-time analytics and risk stratification for Medicaid populations, supporting value-based care and compliance with federal regulations. The solution integrates deeply with state Medicaid systems and provides tools for prior authorizations, utilization management, and provider networks.

Pros

  • Comprehensive integration with EHR, claims, and state systems for seamless Medicaid workflows
  • Advanced population health analytics via HealtheIntent for risk management and outcomes improvement
  • Strong regulatory compliance and interoperability standards support (e.g., FHIR, HL7)

Cons

  • High implementation costs and lengthy deployment timelines (often 12-24 months)
  • Steep learning curve due to complex interface and customization needs
  • Premium pricing may strain budgets for smaller Medicaid organizations

Best For

Large-scale Medicaid managed care organizations and state agencies requiring enterprise-grade population health management and deep system integrations.

Pricing

Custom enterprise licensing with implementation fees; annual costs typically range from $500K+ for mid-sized deployments to multi-millions for statewide systems.

3
athenahealth logo

athenahealth

enterprise

Cloud-based EHR and practice management software optimized for Medicaid claims processing and compliance.

Overall Rating8.7/10
Features
9.2/10
Ease of Use
8.1/10
Value
8.3/10
Standout Feature

athenahealth Network's direct EDI connectivity with Medicaid payers for real-time eligibility checks and automated claims adjudication

athenahealth is a comprehensive cloud-based EHR and practice management platform that supports healthcare providers with electronic health records, revenue cycle management, and patient engagement tools. It excels in handling Medicaid-specific workflows, including automated claims submission, eligibility verification, prior authorizations, and denial management to ensure compliance and maximize reimbursements. The athenaOne suite integrates seamlessly with the athenahealth payer network for efficient processing across multiple Medicaid programs.

Pros

  • Superior revenue cycle management with direct Medicaid payer connectivity for faster claims and fewer denials
  • Cloud-based accessibility and mobile app for on-the-go practice management
  • Advanced population health analytics and reporting compliant with Medicaid quality measures

Cons

  • High subscription costs that may strain smaller practices
  • Initial setup and training can be time-intensive
  • Limited flexibility for deep customizations compared to some competitors

Best For

Mid-sized to large primary care and specialty practices with significant Medicaid patient volumes needing robust RCM and EHR integration.

Pricing

Custom quote-based pricing, typically $300-$500 per provider per month depending on modules and practice size; includes implementation fees.

Visit athenahealthathenahealth.com
4
Gainwell Technologies logo

Gainwell Technologies

enterprise

Medicaid Management Information System (MMIS) for state agencies handling enrollment, adjudication, and reporting.

Overall Rating8.7/10
Features
9.2/10
Ease of Use
7.4/10
Value
8.1/10
Standout Feature

Modular, cloud-native MMIS platform allowing states to deploy and scale individual components independently

Gainwell Technologies provides comprehensive Medicaid enterprise software solutions, including modular Management Information Systems (MMIS), eligibility platforms, pharmacy point-of-sale systems, and care management tools tailored for state agencies. These solutions handle claims adjudication, provider management, member enrollment, and compliance with federal CMS requirements at scale. Leveraging cloud-based architecture and advanced analytics, Gainwell enables efficient operations, fraud detection, and data-driven policy decisions for complex Medicaid programs.

Pros

  • Proven scalability for high-volume state programs serving millions
  • Strong CMS compliance and regulatory expertise
  • Integrated analytics for fraud prevention and utilization management

Cons

  • Lengthy and costly implementation timelines
  • High customization complexity for unique state needs
  • Interface less intuitive for non-technical end-users

Best For

Large state Medicaid agencies requiring robust, enterprise-grade systems with proven performance in multi-state deployments.

Pricing

Custom enterprise contracts, often multi-year deals ranging from $50M+ for full MMIS implementations depending on state size and modules.

Visit Gainwell Technologiesgainwelltechnologies.com
5
Conduent logo

Conduent

enterprise

End-to-end Medicaid administration platform supporting claims, provider networks, and program integrity.

Overall Rating7.8/10
Features
8.3/10
Ease of Use
6.9/10
Value
7.4/10
Standout Feature

Integrated eligibility and enrollment engine with real-time federal-state data exchange for seamless processing

Conduent provides enterprise-grade Medicaid management software and services, including eligibility determination, claims adjudication, provider management, and care coordination platforms tailored for state agencies. Their solutions, such as the Homecare Suite and eligibility systems, support high-volume processing for millions of enrollees while ensuring HIPAA and CMS compliance. With a focus on business process outsourcing integration, Conduent helps streamline Medicaid operations from enrollment to payment.

Pros

  • Proven scalability for large state Medicaid programs serving millions
  • Strong compliance tools and regulatory reporting capabilities
  • Integrated software and managed services reduce operational burden

Cons

  • Complex implementation with long timelines and high upfront costs
  • User interface feels dated and has a steep learning curve
  • Limited flexibility for customization without vendor involvement

Best For

Large state Medicaid agencies prioritizing reliability and compliance over rapid deployment and ease of use.

Pricing

Custom enterprise contracts, often $50M+ multi-year deals including software, implementation, and managed services.

Visit Conduentconduent.com
6
Optum logo

Optum

enterprise

Analytics-driven solutions for Medicaid payers including claims processing and population health management.

Overall Rating8.4/10
Features
9.1/10
Ease of Use
7.6/10
Value
8.0/10
Standout Feature

AI-powered prospective risk adjustment and Episode of Care Analytics for precise Medicaid reimbursement optimization

Optum offers a comprehensive Medicaid software platform designed for managed care organizations, focusing on claims processing, eligibility management, provider contracting, and care coordination. Leveraging UnitedHealth Group's extensive data resources, it provides advanced analytics for population health management, risk adjustment, and utilization review to optimize Medicaid program performance. The solution supports end-to-end operations from enrollment to payment integrity, with strong emphasis on compliance and value-based care.

Pros

  • Powerful analytics and AI-driven insights from vast healthcare data
  • Scalable for large-scale Medicaid plans with robust compliance tools
  • Integrated modules for care management and payment accuracy

Cons

  • Complex implementation and steep learning curve for users
  • High enterprise-level pricing not ideal for smaller organizations
  • Limited flexibility in customization without professional services

Best For

Large Medicaid managed care organizations needing enterprise-grade analytics and integrated population health management.

Pricing

Custom enterprise pricing; typically per-member-per-month fees starting around $5-15, plus implementation costs.

Visit Optumoptum.com
7
eClinicalWorks logo

eClinicalWorks

enterprise

EHR and revenue cycle management tool with strong Medicaid billing and telehealth integration.

Overall Rating7.8/10
Features
8.2/10
Ease of Use
6.9/10
Value
7.5/10
Standout Feature

Automated Medicaid eligibility checks and prior authorization workflows integrated directly into the EHR

eClinicalWorks is a comprehensive EHR and practice management platform designed to support Medicaid providers with features like electronic claims submission, real-time eligibility verification, and automated remittance processing. It integrates patient records, scheduling, billing, and reporting tools to ensure compliance with Medicaid regulations and quality measures such as HEDIS. The system also offers telehealth, patient portals, and analytics for population health management, making it suitable for ambulatory practices and FQHCs serving Medicaid populations.

Pros

  • Robust Medicaid-specific billing and claims management with high acceptance rates
  • Integrated EHR and RCM for streamlined workflows and compliance reporting
  • Strong interoperability via nationwide HIE network for care coordination

Cons

  • Steep learning curve and outdated interface in some modules
  • Reported customer support delays and customization limitations
  • Higher implementation costs and occasional system performance lags

Best For

Mid-sized ambulatory practices and FQHCs managing high Medicaid volumes that need an all-in-one EHR with strong revenue cycle tools.

Pricing

Custom subscription starting at $449/provider/month, plus implementation fees ($10K+), hardware, and per-user add-ons for advanced RCM.

Visit eClinicalWorkseclinicalworks.com
8
NextGen Healthcare logo

NextGen Healthcare

enterprise

Ambulatory EHR system featuring Medicaid-specific interoperability and practice management capabilities.

Overall Rating8.1/10
Features
8.5/10
Ease of Use
7.4/10
Value
7.8/10
Standout Feature

Enterprise Revenue Cycle Management with AI-driven claims optimization and real-time Medicaid eligibility verification

NextGen Healthcare provides a comprehensive EHR and practice management platform tailored for ambulatory care, with strong support for Medicaid billing, claims submission, and eligibility verification. It streamlines revenue cycle management (RCM) through automated scrubbing, real-time payer checks, and compliance reporting specific to Medicaid requirements. The software integrates with clearinghouses and offers population health tools to manage high-volume Medicaid patient populations effectively.

Pros

  • Robust Medicaid claims processing and denial management tools
  • Strong interoperability with HIEs and FHIR standards for seamless data exchange
  • Scalable analytics and reporting for Medicaid quality measures and HEDIS compliance

Cons

  • Steep learning curve due to dense interface and customization needs
  • High upfront implementation and training costs
  • Occasional delays in customer support response times

Best For

Mid-sized ambulatory practices or FQHCs with significant Medicaid patient volumes needing integrated EHR and RCM.

Pricing

Subscription-based pricing starts at around $400 per provider per month, plus one-time implementation fees of $10K-$50K depending on practice size.

9
ZeOmega logo

ZeOmega

specialized

Care management platform tailored for Medicaid managed care organizations with utilization and prior auth tools.

Overall Rating8.2/10
Features
8.7/10
Ease of Use
7.4/10
Value
7.9/10
Standout Feature

Jiva's 360-degree unified member view integrating clinical, financial, and social determinants data for holistic Medicaid care decisions

ZeOmega's Jiva platform is a comprehensive enterprise management solution tailored for health payers, including Medicaid managed care organizations, offering integrated tools for care management, utilization review, population health analytics, and claims processing. It enables Medicaid plans to coordinate care for high-risk populations, ensure regulatory compliance, and optimize costs through advanced workflows and member engagement features. With strong interoperability and configurable rules engines, Jiva supports value-based care models prevalent in Medicaid.

Pros

  • Robust care management and utilization tools optimized for Medicaid's complex populations
  • Advanced population health analytics with predictive risk stratification
  • Strong regulatory compliance features and interoperability standards support

Cons

  • Steep implementation timeline and high upfront customization costs
  • Complex interface requiring extensive training for users
  • Less ideal for smaller Medicaid plans due to scalability focus on enterprises

Best For

Large Medicaid managed care organizations needing an all-in-one platform for care coordination and population health management.

Pricing

Enterprise-level custom pricing, typically subscription-based per member per month (PMPM) starting around $5-15, plus implementation fees.

Visit ZeOmegazeomega.com
10
HealthEdge logo

HealthEdge

enterprise

Modern core administrative processing system for Medicaid payers focusing on claims and member management.

Overall Rating8.1/10
Features
8.5/10
Ease of Use
7.5/10
Value
7.8/10
Standout Feature

Advanced no-code/low-code rules engine that dynamically adapts to evolving Medicaid eligibility and reimbursement rules

HealthEdge delivers cloud-native software solutions tailored for health payers, including Medicaid managed care organizations, through its flagship HealthRules Payer platform. This comprehensive system handles core administrative functions such as claims processing, member enrollment, provider network management, and benefits configuration. It emphasizes modularity, scalability, and compliance with complex Medicaid regulations, supporting transitions to value-based care.

Pros

  • Robust, configurable rules engine for handling intricate Medicaid policies
  • Modular architecture allows scalability and customization
  • Strong integration with care management and analytics tools

Cons

  • Steep implementation and learning curve for complex deployments
  • Custom pricing lacks transparency and can be costly for smaller plans
  • Less intuitive user interface compared to some modern SaaS alternatives

Best For

Mid-sized Medicaid managed care organizations needing a scalable, policy-rich core payer platform.

Pricing

Custom enterprise subscription pricing based on modules, users, and claims volume; typically starts in the high six figures annually—contact sales for quotes.

Visit HealthEdgehealthege.com

Conclusion

The review highlights Epic Systems as the leading choice, offering a comprehensive EHR platform with strong Medicaid billing and claims management. Oracle Cerner follows with an integrated suite that excels in revenue cycle management and interoperability, while athenahealth stands out for its cloud-based efficiency and telehealth integration. Together, these top tools showcase the depth of innovation in supporting Medicaid operations, meeting diverse needs from providers to state agencies.

Epic Systems logo
Our Top Pick
Epic Systems

Take the next step in streamlining your Medicaid processes by exploring Epic Systems—its robust features make it a trusted partner for success in delivering quality care.