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Transportation Logistics

Top 10 Best Freight Audit Software of 2026

Explore top 10 freight audit software to streamline logistics, cut costs, and boost efficiency. Compare features and optimize your supply chain today.

Min-ji Park

Min-ji Park

Feb 11, 2026

10 tools comparedExpert reviewed
Independent evaluation · Unbiased commentary · Updated regularly
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In logistics, precise freight auditing is vital for cost optimization, error reduction, and streamlined payments—yet selecting the right tool demands insight into diverse capabilities. Below, we’ve identified the top 10 solutions from the list, each tailored to empower shippers and carriers through advanced features.

Quick Overview

  1. 1#1: Cass Freight Audit - Automates freight invoice auditing, payment processing, and provides advanced business intelligence for shippers.
  2. 2#2: CTSI-Global Freight Audit - Delivers end-to-end freight audit and payment solutions with real-time analytics and exception management.
  3. 3#3: nVISION Global - Provides automated freight bill audit, payment, and claims management with customizable reporting.
  4. 4#4: Comdata Freight Audit - Offers integrated freight payment and audit services optimized for carriers and shippers.
  5. 5#5: MercuryGate - TMS platform with robust freight audit capabilities for rate management and invoice validation.
  6. 6#6: 3GTS - Cloud-based TMS featuring comprehensive freight auditing and settlement automation.
  7. 7#7: Oracle Transportation Management - Enterprise TMS with advanced freight audit, charge assurance, and payment processing modules.
  8. 8#8: SAP Transportation Management - Integrated transportation solution including freight cost simulation, auditing, and settlement.
  9. 9#9: Blue Yonder Transportation Management - Supply chain platform with freight audit tools for invoice matching and cost control.
  10. 10#10: Manhattan Active Transportation Management - Scalable TMS offering freight bill audit, payment execution, and analytics for logistics operations.

We ranked these tools based on automation efficiency, real-time analytics, user experience, and holistic value, ensuring they meet the demands of modern supply chain operations.

Comparison Table

Efficient freight audit software is vital for streamlining logistics operations, and selecting the right tool can enhance cost control and accuracy. This comparison table examines key options such as Cass Freight Audit, CTSI-Global Freight Audit, nVISION Global, Comdata Freight Audit, MercuryGate, and more, outlining their features and suitability. Readers will discover insights to choose software aligned with their business needs, whether prioritizing automation, compliance, or scalability.

Automates freight invoice auditing, payment processing, and provides advanced business intelligence for shippers.

Features
9.8/10
Ease
8.9/10
Value
9.5/10

Delivers end-to-end freight audit and payment solutions with real-time analytics and exception management.

Features
9.6/10
Ease
8.7/10
Value
9.0/10

Provides automated freight bill audit, payment, and claims management with customizable reporting.

Features
8.7/10
Ease
7.8/10
Value
8.1/10

Offers integrated freight payment and audit services optimized for carriers and shippers.

Features
8.7/10
Ease
7.9/10
Value
8.2/10

TMS platform with robust freight audit capabilities for rate management and invoice validation.

Features
8.8/10
Ease
7.4/10
Value
7.9/10
63GTS logo8.2/10

Cloud-based TMS featuring comprehensive freight auditing and settlement automation.

Features
8.7/10
Ease
7.5/10
Value
8.0/10

Enterprise TMS with advanced freight audit, charge assurance, and payment processing modules.

Features
9.2/10
Ease
6.8/10
Value
7.5/10

Integrated transportation solution including freight cost simulation, auditing, and settlement.

Features
9.1/10
Ease
6.8/10
Value
7.9/10

Supply chain platform with freight audit tools for invoice matching and cost control.

Features
8.8/10
Ease
7.2/10
Value
7.5/10

Scalable TMS offering freight bill audit, payment execution, and analytics for logistics operations.

Features
9.1/10
Ease
7.4/10
Value
7.7/10
1
Cass Freight Audit logo

Cass Freight Audit

specialized

Automates freight invoice auditing, payment processing, and provides advanced business intelligence for shippers.

Overall Rating9.7/10
Features
9.8/10
Ease of Use
8.9/10
Value
9.5/10
Standout Feature

Proprietary auditing engine with decades of data and 99%+ match accuracy across complex multimodal invoices

Cass Freight Audit is a leading enterprise-grade freight audit and payment platform that automates the verification of millions of freight invoices annually against shipment data, contracts, and carrier rates to detect overcharges, errors, and duplicates. It provides comprehensive analytics, compliance management, and seamless payment processing across all freight modes, including domestic and international shipments. Powered by advanced algorithms and a massive proprietary carrier database, it delivers actionable insights via the renowned Cass Freight Index for benchmarking and forecasting.

Pros

  • Industry-leading accuracy with proven overcharge recovery exceeding industry averages
  • Massive scale handling billions in annual freight payments with multimodal support
  • Robust BI tools including the Cass Freight Index for strategic insights

Cons

  • Custom pricing lacks upfront transparency and suits high-volume users only
  • Enterprise onboarding can take several months
  • Steeper learning curve for non-expert users despite intuitive dashboards

Best For

Large enterprises, 3PLs, and shippers with high freight volumes seeking maximum audit accuracy and savings.

Pricing

Custom quote based on freight volume; typically 0.5-2% of audited spend plus per-invoice fees.

2
CTSI-Global Freight Audit logo

CTSI-Global Freight Audit

specialized

Delivers end-to-end freight audit and payment solutions with real-time analytics and exception management.

Overall Rating9.2/10
Features
9.6/10
Ease of Use
8.7/10
Value
9.0/10
Standout Feature

Precision auditing engine that handles complex international compliance and recovers overcharges at rates up to 5-10% of spend

CTSI-Global Freight Audit, part of the Navigator platform, automates the verification of freight invoices against contracts, rates, and shipment data to detect overcharges and ensure compliance across truckload, LTL, parcel, air, and ocean modes. It streamlines carrier payments, claims processing, and provides advanced business intelligence for transportation spend analysis and optimization. Designed for global enterprises, it integrates seamlessly with TMS, ERP, and WMS systems for end-to-end visibility.

Pros

  • High audit accuracy exceeding 99% with AI-driven discrepancy detection
  • Comprehensive multi-modal support and global carrier network
  • Powerful analytics dashboard for spend visibility and forecasting

Cons

  • Enterprise pricing may be prohibitive for small businesses
  • Implementation can take several months due to customization needs
  • Interface feels complex for users without logistics expertise

Best For

Large enterprises with high-volume, international, multi-modal freight operations needing precise audit and payment automation.

Pricing

Custom enterprise pricing based on freight volume and features; typically starts at $50K+ annually with quotes required.

3
nVISION Global logo

nVISION Global

specialized

Provides automated freight bill audit, payment, and claims management with customizable reporting.

Overall Rating8.3/10
Features
8.7/10
Ease of Use
7.8/10
Value
8.1/10
Standout Feature

Global multi-currency and multi-modal audit engine with AI-powered exception resolution

nVISION Global provides a robust freight audit and payment platform designed to automate invoice validation against contracts, detect overcharges, and streamline payments across multi-modal transportation. The solution offers advanced analytics, exception management, and integration with ERP systems like SAP and Oracle for seamless data flow. It supports global operations with multi-currency handling and compliance features, helping shippers optimize logistics costs and efficiency.

Pros

  • Comprehensive multi-modal freight auditing with strong anomaly detection
  • Advanced reporting and business intelligence tools for cost insights
  • Seamless integrations with major ERP and TMS systems

Cons

  • Interface can feel complex for new users without training
  • Pricing is enterprise-focused, less ideal for small shippers
  • Limited public documentation on advanced customizations

Best For

Mid-to-large enterprises with international, high-volume freight operations needing automated audit and payment automation.

Pricing

Custom enterprise pricing via quote, typically starting at $50K+ annually based on shipment volume and features.

Visit nVISION Globalnvisionglobal.com
4
Comdata Freight Audit logo

Comdata Freight Audit

specialized

Offers integrated freight payment and audit services optimized for carriers and shippers.

Overall Rating8.4/10
Features
8.7/10
Ease of Use
7.9/10
Value
8.2/10
Standout Feature

Overcharge recovery guarantee with proactive carrier dispute resolution

Comdata Freight Audit is a robust platform from Comdata (comdata.com) that automates the auditing, verification, and payment of freight invoices for shippers and logistics providers. It matches bills against shipment data from TMS or ERP systems, detects overcharges and discrepancies using rule-based engines, and streamlines carrier payments. The solution provides detailed reporting, analytics, and exception management to optimize transportation costs and ensure compliance.

Pros

  • High accuracy in overcharge detection with proven savings of 3-7%
  • Seamless integration with major TMS, ERP, and accounting systems
  • End-to-end audit-to-payment workflow reducing manual processing

Cons

  • Complex initial setup and configuration for custom rules
  • Interface feels dated compared to newer cloud-native competitors
  • Pricing scales with volume, less ideal for small shippers

Best For

Mid-to-large enterprises with high freight volumes needing integrated audit and payment management.

Pricing

Custom enterprise pricing based on invoice volume and services; typically starts at $0.50-$2 per invoice plus setup fees—contact for quote.

5
MercuryGate logo

MercuryGate

enterprise

TMS platform with robust freight audit capabilities for rate management and invoice validation.

Overall Rating8.2/10
Features
8.8/10
Ease of Use
7.4/10
Value
7.9/10
Standout Feature

Integrated TMS-freight audit platform with AI-driven exception management for proactive cost recovery

MercuryGate is a comprehensive cloud-based Transportation Management System (TMS) with robust freight audit and payment capabilities, automating the verification of freight invoices against shipment data to detect discrepancies and overcharges. It provides detailed analytics, exception management, and carrier payment processing to streamline operations and reduce costs. The platform integrates seamlessly with ERP systems and offers real-time visibility into freight spend across multimodal transportation.

Pros

  • Advanced automation for freight bill audit and exception resolution
  • Strong multimodal support and real-time analytics
  • Scalable for enterprise-level operations with ERP integrations

Cons

  • Steep learning curve for non-expert users
  • Custom pricing can be expensive for mid-sized firms
  • Requires significant setup and customization

Best For

Large enterprises with complex, high-volume multimodal freight operations seeking integrated TMS and audit solutions.

Pricing

Custom enterprise pricing via quote, typically starting at $50,000+ annually depending on volume and modules.

Visit MercuryGatemercurygate.com
6
3GTS logo

3GTS

enterprise

Cloud-based TMS featuring comprehensive freight auditing and settlement automation.

Overall Rating8.2/10
Features
8.7/10
Ease of Use
7.5/10
Value
8.0/10
Standout Feature

Seamless audit-to-payment workflow with automated exception handling and global carrier compliance

3GTS is a robust freight audit and payment platform that automates the verification of freight invoices across LTL, truckload, parcel, and intermodal shipments. It detects billing errors, overcharges, and compliance issues while integrating payment processing to streamline operations. The software also provides business intelligence tools for spend analysis and reporting, helping shippers optimize transportation costs effectively.

Pros

  • High audit accuracy with proven overcharge recovery rates
  • Integrated freight payment and claims management
  • Comprehensive BI dashboards for actionable insights

Cons

  • User interface appears dated and less intuitive
  • Lengthy onboarding and implementation process
  • Pricing may be steep for smaller shippers

Best For

Mid-to-large shippers with high-volume, multi-modal freight operations needing end-to-end audit and payment automation.

Pricing

Custom pricing based on freight spend volume, typically 1-2% of annual transportation costs with minimums for enterprise clients.

Visit 3GTS3gts.com
7
Oracle Transportation Management logo

Oracle Transportation Management

enterprise

Enterprise TMS with advanced freight audit, charge assurance, and payment processing modules.

Overall Rating8.1/10
Features
9.2/10
Ease of Use
6.8/10
Value
7.5/10
Standout Feature

AI-powered intelligent exception management that automatically resolves freight audit discrepancies with high accuracy

Oracle Transportation Management (OTM) is an enterprise-grade transportation management system with robust freight audit and payment capabilities, automating the verification of freight invoices against shipment data to detect discrepancies and overcharges. It streamlines carrier payment processes, provides detailed analytics for spend visibility, and supports compliance with complex rating engines. OTM integrates seamlessly with other Oracle applications, making it ideal for holistic supply chain management.

Pros

  • Advanced automation for freight bill audit, exception management, and carrier payments
  • Powerful AI-driven analytics and reporting for transportation cost optimization
  • Scalable for global enterprises with strong integration to ERP and other Oracle tools

Cons

  • Steep learning curve and complex implementation requiring significant IT resources
  • High licensing and customization costs
  • Overkill for small businesses focused solely on basic freight auditing

Best For

Large enterprises with complex, high-volume international freight operations needing integrated TMS and audit capabilities.

Pricing

Custom enterprise licensing, typically $100,000+ annually based on modules, users, and transaction volume.

8
SAP Transportation Management logo

SAP Transportation Management

enterprise

Integrated transportation solution including freight cost simulation, auditing, and settlement.

Overall Rating8.2/10
Features
9.1/10
Ease of Use
6.8/10
Value
7.9/10
Standout Feature

Embedded freight settlement with real-time charge calculation and self-billing directly tied to transportation planning and execution

SAP Transportation Management (TM) is a comprehensive enterprise solution for end-to-end transportation processes, featuring robust freight audit and settlement capabilities to verify carrier invoices against shipment data. It automates discrepancy detection, charge calculation, and payment reconciliation while ensuring compliance with contracts and regulations. Integrated deeply with SAP S/4HANA and other modules, it provides advanced analytics for freight cost optimization and visibility across global supply chains.

Pros

  • Deep integration with SAP ERP and S/4HANA for seamless data flow
  • Advanced automation including AI-driven audit and discrepancy resolution
  • Scalable analytics and reporting for global freight cost management

Cons

  • Complex implementation requiring extensive configuration and expertise
  • High licensing and customization costs
  • Steep learning curve for non-SAP users

Best For

Large multinational enterprises with existing SAP infrastructure needing integrated freight audit within full transportation management.

Pricing

Quote-based enterprise licensing; typically starts at $50,000+ annually depending on modules, users, and deployment scale.

9
Blue Yonder Transportation Management logo

Blue Yonder Transportation Management

enterprise

Supply chain platform with freight audit tools for invoice matching and cost control.

Overall Rating8.1/10
Features
8.8/10
Ease of Use
7.2/10
Value
7.5/10
Standout Feature

AI-powered intelligent freight audit that automates discrepancy resolution and payment optimization

Blue Yonder Transportation Management is an enterprise-grade platform offering comprehensive transportation management, including advanced freight audit and payment modules. It automates bill verification, exception management, and payment processing using AI and machine learning to ensure accuracy and compliance. The system integrates seamlessly with broader supply chain planning and execution for end-to-end visibility. While powerful, it's designed more for holistic TMS than standalone freight audit.

Pros

  • AI-driven exception detection for high audit accuracy
  • Seamless integration with full TMS for supply chain visibility
  • Robust analytics and reporting for cost optimization

Cons

  • High cost unsuitable for small to mid-sized businesses
  • Steep learning curve and complex user interface
  • Lengthy implementation and customization process

Best For

Large enterprises with complex, high-volume transportation networks seeking integrated freight audit within a comprehensive TMS.

Pricing

Custom enterprise pricing; annual subscriptions typically start at $100K+ based on scale and modules.

10
Manhattan Active Transportation Management logo

Manhattan Active Transportation Management

enterprise

Scalable TMS offering freight bill audit, payment execution, and analytics for logistics operations.

Overall Rating8.2/10
Features
9.1/10
Ease of Use
7.4/10
Value
7.7/10
Standout Feature

Active Omni AI for predictive freight rating and real-time exception resolution

Manhattan Active Transportation Management is a cloud-native transportation management system (TMS) that includes robust freight audit and payment (FAP) capabilities, automating invoice validation, discrepancy detection, and carrier payments. It integrates seamlessly with broader supply chain operations, leveraging AI-driven analytics for exception management and cost recovery. Designed for enterprise-scale operations, it supports multi-modal freight across global networks, ensuring compliance and optimization.

Pros

  • Advanced AI-powered exception handling and automation for accurate freight bill audits
  • Seamless integration with full TMS for end-to-end visibility and workflow efficiency
  • Scalable cloud platform with global multi-modal support and strong carrier management

Cons

  • Complex implementation and steep learning curve for non-enterprise users
  • High cost structure unsuitable for small to mid-sized businesses
  • Overkill for organizations needing standalone freight audit without full TMS

Best For

Large enterprises with complex, high-volume transportation networks seeking integrated freight audit within a comprehensive TMS.

Pricing

Custom enterprise subscription pricing, typically starting at $100,000+ annually based on volume and modules.

Conclusion

The top freight audit software solutions demonstrate exceptional value, with Cass Freight Audit emerging as the stand-out choice for its seamless automation, payment processing, and advanced business intelligence. CTSI-Global Freight Audit and nVISION Global closely follow, offering robust real-time analytics/exception management and customizable reporting/claims handling, respectively, each tailored to distinct operational needs. Together, they redefine efficiency in logistics finance.

Cass Freight Audit logo
Our Top Pick
Cass Freight Audit

Don’t miss the chance to enhance your freight operations—start with Cass Freight Audit to streamline audits, optimize payments, and unlock actionable insights, or explore CTSI-Global or nVISION Global for specialized workflows.