Key Takeaways
- The basic reproduction number (R0) for the original SARS-CoV-2 strain was estimated at 2.79 (95% CI: 2.29-3.44) based on early Wuhan data.
- Airborne transmission of SARS-CoV-2 was confirmed viable for distances beyond 2 meters in poorly ventilated indoor spaces, with infectious dose as low as 100-1000 virions.
- Asymptomatic individuals contributed 41-45% of SARS-CoV-2 transmissions in household settings per meta-analysis of 77 studies.
- Global cumulative confirmed cases reached 100 million on January 26, 2021.
- US cumulative cases hit 30 million by March 1, 2021.
- India reported peak daily cases of 414,188 on May 7, 2021.
- Global cumulative deaths reached 6 million on November 2, 2021.
- US COVID-19 deaths totaled 1,035,000 by August 2023.
- Case fatality rate (CFR) for original strain 2.3% globally early 2020.
- Hospitalization rate 10.4 per 100,000 during Omicron US peak.
- ICU admission 20-30% of hospitalized adults early pandemic.
- US hospitalizations peaked 132,000 on Jan 5, 2022.
- Pfizer-BioNTech vaccine efficacy 95% against symptomatic infection post-two doses.
- Moderna vaccine 94.1% efficacy in phase 3 trial of 30,000 participants.
- Global doses administered exceeded 13 billion by June 2023.
The blog post explains how Covid-19 spreads rapidly indoors and through asymptomatic carriers.
Global Incidence
- Global cumulative confirmed cases reached 100 million on January 26, 2021.
- US cumulative cases hit 30 million by March 1, 2021.
- India reported peak daily cases of 414,188 on May 7, 2021.
- Brazil surpassed 10 million cases on January 24, 2021.
- Europe accounted for 25% of global cases by end of 2020.
- Africa had underreported cases estimated 2-10x higher via seroprevalence.
- Daily global cases peaked at 5.24 million on January 6, 2022.
- Testing positivity rate exceeded 20% in 50+ countries during Delta wave.
- Excess mortality estimated 14.9 million globally Jan 2020-Dec 2021.
- Seroprevalence reached 65% in Manaus, Brazil by Oct 2020.
- Global infections estimated 5-10x higher than reported cases per IHME.
- Weekly cases in WHO regions peaked at 10M in Western Pacific.
- US positivity rate averaged 8.5% during summer 2021 Delta surge.
- UK sequenced 50% of cases during Omicron, identifying 100+ sublineages.
- Peru had highest per capita cases at 7,100 per million by June 2022.
- Cumulative pediatric cases in US: 8.3M by Sep 2022.
- Hospital-onset cases 5.8% of US hospitalizations Jan-Jun 2021.
- Global case growth rate slowed to 0.2% weekly by mid-2022.
- Long COVID incidence 10-30% among confirmed cases per meta-analysis.
- Reinfection rate 0.7 per 100 person-years post-recovery.
Global Incidence Interpretation
Hospitalization
- Hospitalization rate 10.4 per 100,000 during Omicron US peak.
- ICU admission 20-30% of hospitalized adults early pandemic.
- US hospitalizations peaked 132,000 on Jan 5, 2022.
- Ventilator use 10-15% of COVID ICU patients.
- Pediatric hospitalizations 0.7-1.3 per 100,000 weekly peak.
- Length of stay median 7 days for survivors, 10 for non-survivors.
- Oxygen therapy needed by 45% of hospitalized in Brazil.
- Hospital capacity exceeded in Lombardy, Italy with 94% occupancy.
- Readmission rate 9.9% within 30 days post-discharge.
- ECMO survival 50% in COVID ARDS patients.
- Acute kidney injury 39% in hospitalized US adults.
- Thrombotic events 31% in ICU patients.
- Pregnancy hospitalization rate 3.4x higher than influenza.
- Delta hospitalization risk 17x higher in unvaccinated.
- Omicron hospitalization 2.4x lower than Delta per case.
- US nursing home hospitalizations 167,000+ during pandemic.
- Mechanical ventilation failure rate 70-90% early waves.
- Prone positioning reduced mortality by 16% in moderate-severe ARDS.
- Global ICU bed occupancy peaked 90% in peak waves.
- Median age hospitalized 65 years, 53% male.
- Long-term care facility cases 40% of early US hospitalizations.
Hospitalization Interpretation
Mortality
- Global cumulative deaths reached 6 million on November 2, 2021.
- US COVID-19 deaths totaled 1,035,000 by August 2023.
- Case fatality rate (CFR) for original strain 2.3% globally early 2020.
- Infection fatality rate (IFR) estimated 0.68% (0.53-0.82%) meta-analysis.
- Excess deaths in 2020: 3M in US, 1.8x official COVID toll.
- Peru highest COVID mortality rate 0.68% of population.
- Delta variant CFR 1.9% in unvaccinated vs 0.7% vaccinated.
- Pediatric mortality <0.01% in US, 1,200 deaths total by 2022.
- Nursing home deaths 20% of US total despite 1% population.
- Global underreporting of deaths estimated 2.74x official figures.
- Italy CFR peaked 14.2% in March 2020.
- Comorbidities: 94% of US decedents had them, hypertension 60%.
- Maternal mortality ratio increased 62% in US 2021.
- Omicron IFR 0.15% vs Delta 0.30% in South Africa.
- Age-stratified IFR: 0.0003% under 20, 5% over 80.
- Ventilator mortality 88% early pandemic in NY.
- Remdesivir reduced mortality by 17% in WHO Solidarity trial.
- India excess deaths 4.07M during second wave.
- Brazil official 680k deaths, excess 1.1M by 2022.
- Russia CFR 2.4% highest in Europe by 2022.
- Global P-score (pandemic mortality) highest in Bulgaria 12%.
Mortality Interpretation
Transmission
- The basic reproduction number (R0) for the original SARS-CoV-2 strain was estimated at 2.79 (95% CI: 2.29-3.44) based on early Wuhan data.
- Airborne transmission of SARS-CoV-2 was confirmed viable for distances beyond 2 meters in poorly ventilated indoor spaces, with infectious dose as low as 100-1000 virions.
- Asymptomatic individuals contributed 41-45% of SARS-CoV-2 transmissions in household settings per meta-analysis of 77 studies.
- Surface (fomite) transmission risk was low, with 0.1% chance of infection from touching contaminated surfaces followed by face-touching.
- Superspreading events accounted for 80% of transmissions where 10% of cases caused 80% of secondary infections.
- Incubation period median was 5.1 days (95% CI: 4.5-5.8 days) from Chinese cohort of 1,099 cases.
- Serial interval median was 4.0 days (95% CI: 3.1-4.9) in 124 laboratory-confirmed Chinese cases.
- Viral load peaked at 1.0 × 10^7 copies/mL on day 4 post-symptom onset in nasopharyngeal swabs.
- Household secondary attack rate was 16.6% (95% CI: 14.0-19.3%) from 85 studies meta-analysis.
- Generation time for Delta variant averaged 4.1 days (SD 1.5) vs 6.5 for Alpha.
- Omicron variant had higher household attack rate of 25.5% compared to Delta's 17.5%.
- Ventilation reducing aerosol transmission by 70% in simulated indoor environments.
- Mask-wearing reduced transmission risk by 53-85% in community settings per randomized trials.
- Children aged 0-9 years had attack rate of 6.6% in schools during early pandemic.
- Nosocomial transmission accounted for 18.9% of healthcare worker infections in UK study.
- Wastewater SARS-CoV-2 RNA levels correlated with cases 4-10 days prior at r=0.85.
- Border screenings detected only 1.5-2.5% of imported cases in international travelers.
- Choir practice outbreak in Washington state infected 52 of 61 attendees (87% attack rate).
- Bus ride transmission risk increased 4-fold per hour of exposure in Guangzhou study.
- Pre-symptomatic transmission accounted for 44% of household infections in Taiwan.
- Viral shedding duration averaged 20 days in mild cases, up to 83 days in severe.
- Contact tracing apps reduced secondary cases by 25% in modeled scenarios.
- Animal-to-human transmission confirmed in mink farms with 68% seroprevalence in workers.
- School closures reduced R by 0.1-0.4 in modeling studies.
- Nightclub superspreader event in South Korea infected 5,000+ from one case.
- Elevator transmission risk low at 0.1% per ride but cumulative in high-rises.
- Speech droplet emission up to 8,000 droplets per minute at high volume.
- Omicron had 3.2-fold higher attack rate in unvaccinated households.
- Hand hygiene compliance reduced transmission by 16-21% in hospitals.
- Lockdown stringency index correlated with 12% case reduction per 10-point increase.
Transmission Interpretation
Vaccination
- Pfizer-BioNTech vaccine efficacy 95% against symptomatic infection post-two doses.
- Moderna vaccine 94.1% efficacy in phase 3 trial of 30,000 participants.
- Global doses administered exceeded 13 billion by June 2023.
- Booster dose reduced hospitalization by 90% vs two doses.
- Vaccine coverage: 70% fully vaccinated globally by mid-2023.
- J&J single-dose efficacy 66% against moderate-severe disease.
- mRNA vaccines prevented 14.4M deaths in first year.
- Waning efficacy against infection 6 months post-dose: 40-60%.
- Pediatric Pfizer efficacy 90.7% in 5-11 years.
- Vaccine effectiveness vs Omicron hospitalization 76% after two doses.
- AstraZeneca efficacy 76% against symptomatic Delta.
- Breakthrough infections 0.01% per dose in Israel early rollout.
- Sinusitis after vaccine 1.2 cases per million doses.
- Global vaccine inequity: low-income countries <25% vaccinated.
- Bivalent booster 54% effective vs hospitalization.
- Novavax efficacy 90.4% in phase 3 trial.
- Vaccine prevented 19.8M deaths in Europe alone.
- Myocarditis risk 12.6x higher post-infection than vaccine.
- US fully vaccinated 81% adults by Sep 2022.
- COVAX delivered 1.5B doses to 144 countries.
- Third dose uptake 60% in high-income countries.
- Anaphylaxis rate 2.5-11.1 per million mRNA doses.
- Fever prevalence 16% after first dose Pfizer.
Vaccination Interpretation
Sources & References
- Reference 1WWWNCwwwnc.cdc.govVisit source
- Reference 2NEJMnejm.orgVisit source
- Reference 3PNASpnas.orgVisit source
- Reference 4NATUREnature.comVisit source
- Reference 5THELANCETthelancet.comVisit source
- Reference 6BMJbmj.comVisit source
- Reference 7CDCcdc.govVisit source
- Reference 8ACPJOURNALSacpjournals.orgVisit source
- Reference 9SCIENCEscience.orgVisit source
- Reference 10EUROSURVEILLANCEeurosurveillance.orgVisit source
- Reference 11MEDRXIVmedrxiv.orgVisit source
- Reference 12PUBSpubs.aip.orgVisit source
- Reference 13COVID19covid19.who.intVisit source
- Reference 14CORONAVIRUScoronavirus.jhu.eduVisit source
- Reference 15WORLDOMETERSworldometers.infoVisit source
- Reference 16OURWORLDINDATAourworldindata.orgVisit source
- Reference 17ECDCecdc.europa.euVisit source
- Reference 18WHOwho.intVisit source
- Reference 19HEALTHDATAhealthdata.orgVisit source
- Reference 20GOVgov.ukVisit source
- Reference 21EPICENTROepicentro.iss.itVisit source
- Reference 22JAMANETWORKjamanetwork.comVisit source
- Reference 23SCIENCEscience.thewire.inVisit source
- Reference 24COVIDcovid.cdc.govVisit source
- Reference 25ATSJOURNALSatsjournals.orgVisit source





