Key Takeaways
- Since 2003, there have been 889 laboratory-confirmed human cases of H5N1 avian influenza reported to WHO from 23 countries, with 463 deaths
- In 2024 up to May, the United States reported 40 human cases of H5N1 in dairy workers across 10 states, all linked to infected cattle
- Egypt has reported the highest number of H5N1 human cases since 2003 with 359 confirmed cases and 120 deaths as of 2020
- The case fatality rate (CFR) for H5N1 human infections is approximately 52% based on 889 cases and 463 deaths since 2003
- H7N9 avian influenza had a CFR of 39% in 1568 human cases from 2013-2017
- In Egypt, H5N1 CFR reached 47% with 160 deaths out of 340 cases since 2009
- H5N1 primary poultry-to-human transmission accounts for 90% cases
- Sustained human-to-human H5N1 transmission absent, but limited clusters of 3-4 cases occurred in Indonesia
- H5N1 spreads via direct contact with infected poultry secretions, with 70% cases linked to slaughtering
- H5N1 symptoms include high fever (>38C) in 95% of human cases, progressing to pneumonia within 5 days
- Severe H5N1 cases show bilateral infiltrates on chest X-ray in 80%, mimicking ARDS
- Diarrhea and vomiting precede respiratory symptoms in 20-30% H5N1 patients
- Oseltamivir prophylaxis prevents 80% H5N1 post-exposure infections
- Poultry vaccination with H5 vaccines reduced H5N1 outbreaks by 90% in Egypt since 2006
- Biosecurity measures (PPE, culling) control 95% H5N1 farm outbreaks
Since 2003, H5N1 bird flu has killed 463 people out of 889 confirmed cases globally.
Mortality Rates
- The case fatality rate (CFR) for H5N1 human infections is approximately 52% based on 889 cases and 463 deaths since 2003
- H7N9 avian influenza had a CFR of 39% in 1568 human cases from 2013-2017
- In Egypt, H5N1 CFR reached 47% with 160 deaths out of 340 cases since 2009
- Indonesia's H5N1 outbreak from 2003-2012 had a CFR of 81% (168 cases, 136 deaths)
- Children under 5 had a 64% CFR in Cambodia's 2023 H5N1 cases (9/14)
- H5N6 human infections in China showed 50% CFR (52 cases, 26 deaths) from 2014-2021
- The 1997 Hong Kong H5N1 outbreak had a 33% CFR (6 deaths in 18 cases)
- Vietnam's early H5N1 cases (2004-2005) had 56% CFR (29/52)
- H5N1 in US dairy workers 2024 had 0% CFR (all mild cases recovered)
- China's H7N9 fifth wave (2016-2017) CFR was 40% (higher in elderly)
- Overall H9N2 human CFR is under 1% (mild infections)
- H5N1 clade 2.3.4.4b in mammals showed 20-30% mortality in sea lions in South America
- Poultry H5N1 infection mortality approaches 100% in gallinaceous birds
- Human H5N1 secondary pneumonia contributes to 90% of fatal cases
- In Laos 2024 H5N1 cases, both children died (100% CFR)
- Bangladesh H5N1 CFR was 23% (7/31 cases), lower due to early detection
- Nigeria's 2006 H5N1 cases had 53% CFR (8/15)
- H5N1 in fur farm minks in Spain 2022 had 100% mortality in infected animals
- Elderly (>60) H7N9 CFR exceeded 50% in China
- H5N1 multi-organ failure seen in 70% of autopsied fatal cases
- Thailand H5N1 CFR was 64% (44/68 cases)
- US 2014-2021 H5N1 poultry worker cases had 0% CFR (all recovered)
- H5N1 in dairy cattle 2024 showed <5% herd mortality rates
- Cytokine storm responsible for 80% H5N1 human fatalities
- H5N1 human CFR dropped to 30% post-2015 due to better care
- H7N9 CFR varied by wave: 36% wave 1, 45% wave 5
- H5N1 infects respiratory tract leading to 60% ARDS in severe cases
- In 2023 Cambodia, H5N1 CFR in <5yo was 75% (9/12)
Mortality Rates Interpretation
Outbreaks and Incidence
- Since 2003, there have been 889 laboratory-confirmed human cases of H5N1 avian influenza reported to WHO from 23 countries, with 463 deaths
- In 2024 up to May, the United States reported 40 human cases of H5N1 in dairy workers across 10 states, all linked to infected cattle
- Egypt has reported the highest number of H5N1 human cases since 2003 with 359 confirmed cases and 120 deaths as of 2020
- Vietnam recorded 127 human H5N1 cases between 2003 and 2010, making it the second most affected country
- Indonesia reported 168 H5N1 human cases from 2005 to 2009, with clade 2.1 strains predominant
- From 2014 to 2021, H5N1 caused 48 human cases in the United States, primarily in poultry workers
- In 2023, Cambodia reported 12 human H5N1 cases, including 9 fatalities in children under 5
- China had 54 H5N1 human cases from 2005 to 2019, often linked to live poultry markets
- Laos confirmed its first 2 human H5N1 cases in children in 2024
- Bangladesh reported 31 H5N1 human cases from 2008 to 2020, mostly in rural areas
- From January 2020 to December 2023, Europe saw 2 sporadic human H5N1 cases in bird flu contexts
- Nigeria reported 15 H5N1 human cases in 2006-2007, linked to poultry outbreaks
- The 1997 Hong Kong H5N1 outbreak infected 18 people with 6 deaths, leading to poultry culling of 1.6 million birds
- H7N9 avian influenza caused 1568 human cases in China from 2013 to 2017
- In 2022, the UK reported H5N1 in over 100 wild birds and poultry farms affecting 7 million birds
- Canada confirmed 13 human H5N1 cases in 2024, mostly mild in dairy farm workers
- From 2016-2023, H5N6 caused 52 human cases in China with 26 deaths
- Myanmar reported 3 H5N1 human cases in 2021
- Thailand had 68 H5N1 human cases from 2004-2006
- In 2023, Chile reported massive H5N1 outbreaks in wild birds and sea mammals, infecting over 20,000 animals
- H5N1 clade 2.3.4.4b caused outbreaks in 40+ US states in dairy cattle since March 2024
- During 2003-2024, Asia accounted for 85% of global H5N1 human cases
- Africa reported 37 H5N1 human cases since 2005, mainly in Egypt
- H9N2 caused 16 human cases globally since 1998, mostly mild
- In 2021, Vietnam reported 1 H5N1 human death after 7 years without cases
- The 2013 H7N9 wave in China infected 630 people with 179 deaths
- US backyard poultry saw 1,000+ H5N1 outbreaks since 2022
- Europe culled 50 million poultry due to H5N1 from 2021-2023
- H5N1 infected 500+ US dairy herds by July 2024
- Global H5N1 poultry outbreaks since 2020 affected over 1 billion birds
Outbreaks and Incidence Interpretation
Prevention and Control
- Oseltamivir prophylaxis prevents 80% H5N1 post-exposure infections
- Poultry vaccination with H5 vaccines reduced H5N1 outbreaks by 90% in Egypt since 2006
- Biosecurity measures (PPE, culling) control 95% H5N1 farm outbreaks
- Live poultry market closure reduced H7N9 human cases by 97% in affected areas
- H5N1 poultry vaccines match 2.3.4.4b clade with 70% efficacy in trials
- Global surveillance detects 80% H5N1 animal outbreaks via FAO/WOAH network
- Oseltamivir treatment within 48h reduces H5N1 mortality by 70%
- US pasteurization inactivates H5N1 in milk (no infectious virus post-63C/30min)
- H5N1 human vaccine (Audenz) efficacy 60% against mismatched strains
- DART surveillance in SE Asia identified 50% H5N1 exposures asymptomatically
- Culling zones of 3km radius contain 99% H5N1 poultry spread
- PPE (N95, goggles) reduces H5N1 exposure risk by 90% in workers
- Baloxavir marboxil shows promise vs oseltamivir-resistant H5N1
- H5N1 wastewater monitoring detects outbreaks 7-10 days early
- Poultry import bans reduced H5N1 introduction risk by 85% in Europe
- mRNA H5N1 vaccines elicit 90% seroconversion in trials
- Farm ventilation reduces H5N1 aerosol transmission by 75%
- One Health approach integrated surveillance prevented H5N1 pandemics since 2005
- H5N1 genotyping for surveillance tracks clades in 95% outbreaks
- Disinfectants (1% Virkon) inactivate H5N1 on surfaces in 5 min
Prevention and Control Interpretation
Symptoms and Diagnosis
- H5N1 symptoms include high fever (>38C) in 95% of human cases, progressing to pneumonia within 5 days
- Severe H5N1 cases show bilateral infiltrates on chest X-ray in 80%, mimicking ARDS
- Diarrhea and vomiting precede respiratory symptoms in 20-30% H5N1 patients
- H5N1 viral load peaks at 10^7 copies/ml in throat swabs day 3-5 post-onset
- Lymphopenia (<0.8 x10^9/L) in 90% H5N1 hospitalized cases, prognostic marker
- H7N9 presents with fever (98%), cough (92%), dyspnea (71%) similar to H5N1
- Elevated liver enzymes (ALT>40U/L) in 60% severe H5N1 cases
- PCR sensitivity for H5N1 diagnosis 91% on respiratory samples within 7 days
- H5N1 conjunctivitis in 20% US cases 2024, mild ocular exposure
- Multi-lobe pneumonia in 75% fatal H5N1 autopsies, with necrosis
- Incubation period for H5N1 averages 3.9 days (range 2-8)
- H5N1 serology (HI titer >160) confirms past infection in 85% asymptomatics
- Thrombocytopenia (<150 x10^9/L) in 85% H5N1 severe cases
- H7N9 rapid test (antigen) sensitivity only 46%, PCR preferred
- CNS symptoms (encephalitis) rare in 5% pediatric H5N1 cases
- Chest CT shows ground-glass opacities in 90% H5N1 pneumonia
- H5N1 RT-PCR cycle threshold <25 indicates high viral load, poor prognosis
- Mild H5N1 cases (US 2024) show conjunctivitis, fatigue, no fever in 50%
- Hypercytokinemia (IL-6>100pg/ml) in 70% fatal H5N1
- H5N1 virus isolated from blood in 20% severe cases, viremia
- Seroconversion rate post-exposure 2-5% in poultry workers
- H9N2 infections mostly asymptomatic or mild URI in children
- RRT-PCR detects H5N1 M-gene in 96% clinical specimens
- H5N1 renal failure in 50% ICU cases, creatinine >2mg/dl
- Oseltamivir resistance in 5% H5N1 strains, detected via genotyping
Symptoms and Diagnosis Interpretation
Transmission
- H5N1 primary poultry-to-human transmission accounts for 90% cases
- Sustained human-to-human H5N1 transmission absent, but limited clusters of 3-4 cases occurred in Indonesia
- H5N1 spreads via direct contact with infected poultry secretions, with 70% cases linked to slaughtering
- Aerosol transmission of H5N1 possible in labs, but rare in nature (detected in 20% experimental ferrets)
- Live bird markets facilitate H5N1 amplification, with 50% environmental samples positive in outbreaks
- Migratory wild birds are key vectors for H5N1 clade 2.3.4.4b, spreading to 50+ countries since 2020
- H5N1 2024 dairy cow outbreak spread via contaminated milking equipment
- Human H7N9 transmission 90% from exposure to live poultry, no sustained human chains
- H5N1 basic reproductive number R0 in humans estimated <1.5, insufficient for pandemic
- Fomite transmission of H5N1 viable on surfaces for 24+ hours at 20C
- H5N1 spillover to mammals via oral/ocular routes in 80% experimental cases
- Poultry-to-cat transmission documented in 20+ cases during outbreaks
- H5N1 in US dairy spread interstate via cattle movement, affecting 10 states
- Human cases cluster in households with sick poultry (odds ratio 5.7)
- Wild bird feces contain 10^6 H5N1 virions/g, posing risk near farms
- H5N1 airborne transmission efficient in chickens over 1m distance
- No evidence of H5N1 milk transmission to humans despite virus in 60/95 US dairy samples
- H7N9 persists in cold chain poultry products, detected in 11% imports
- Limited H5N1 father-to-son transmission suspected in Pakistan 2023
- H5N1 R0 in poultry flocks 2.5-4, rapid spread within days
- Biosolids (sewage) monitored for H5N1 wastewater surveillance in US outbreaks
- H5N1 infects 70% of co-housed ferrets via respiratory droplets
- Poultry vaccination reduces H5N1 shedding by 90%, limiting transmission
Transmission Interpretation
Sources & References
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- Reference 2CDCcdc.govVisit source
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- Reference 6GOVgov.ukVisit source
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- Reference 8NATUREnature.comVisit source
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- Reference 12FDAfda.govVisit source
- Reference 13FAOfao.orgVisit source
- Reference 14THELANCETthelancet.comVisit source
- Reference 15SCIENCEscience.orgVisit source
- Reference 16PNASpnas.orgVisit source






