Top 10 Best Small Manufacturing Accounting Software of 2026

QuickBooks Enterprise is a powerful desktop accounting software from Intuit, optimized for small to mid-sized manufacturing businesses with advanced inventory and production management tools. It excels in handling bill of materials (BOM), assemblies, serial/lot tracking, and job costing to streamline manufacturing workflows alongside core financial accounting. The software provides customizable reports, real-time inventory visibility, and scalability for growing operations, making it a top choice for integrated manufacturing accounting.

Fishbowl is a comprehensive inventory management and light manufacturing software tailored for small to medium-sized businesses, particularly those in warehousing, distribution, and discrete manufacturing. It provides advanced features like multi-location inventory tracking, bills of materials (BOMs), work orders, lot/serial number control, and order fulfillment. While not a full accounting solution, it offers seamless two-way synchronization with QuickBooks, enabling accurate inventory valuation and cost tracking to support small manufacturing accounting needs.

Odoo is a modular, open-source ERP platform that provides comprehensive tools for small manufacturing businesses, including production planning, inventory management, and fully integrated accounting. It supports bill of materials (BOM), work orders, quality control, and real-time cost tracking, seamlessly linking manufacturing operations to financials like invoicing, payments, and reporting. This all-in-one solution scales from small shops to growing enterprises without requiring multiple disjointed systems.

Katana MRP is a cloud-based manufacturing resource planning (MRP) software designed for small to medium-sized manufacturers, offering real-time inventory tracking, production scheduling, and order management. It integrates seamlessly with accounting tools like QuickBooks and Xero to handle cost tracking, COGS calculations, and financial reporting tailored to manufacturing workflows. While not a full standalone accounting suite, it excels in bridging production data with financial insights for operational efficiency.

MRPeasy is a cloud-based MRP/ERP software tailored for small to medium-sized manufacturers, offering integrated tools for production planning, inventory management, procurement, CRM, and accounting. It enables real-time tracking of manufacturing costs, work orders, BOMs, and financials like invoicing, P&L statements, and balance sheets. The platform streamlines operations for make-to-order businesses, reducing manual data entry and providing actionable insights for profitability.

JobBOSS² is an ERP software tailored for small to medium-sized job shops and make-to-order manufacturers, integrating shop floor management, inventory control, and accounting into a single platform. It handles everything from quoting and order entry to job tracking, scheduling, quality control, and financial reporting, with a focus on precise job costing. The solution provides real-time visibility into production costs, profitability, and inventory levels to support efficient operations in custom manufacturing environments.

E2 Shop System by ShopTech is an ERP software tailored for small to mid-sized job shops and make-to-order manufacturers, integrating shop floor management, quoting, scheduling, inventory, and accounting functionalities. It provides real-time visibility into production processes, job costing, and financials, enabling accurate tracking from quote to cash. The system supports paperless operations and wireless data collection, making it suitable for dynamic manufacturing environments focused on custom jobs.

Global Shop Solutions is a comprehensive ERP platform tailored for small to medium-sized discrete manufacturers, offering integrated accounting alongside shop management tools. Its accounting module delivers job costing, general ledger, accounts payable/receivable, payroll, and financial reporting with direct ties to production data for precise profitability analysis. Designed for job shops, it combines quoting, scheduling, inventory, and quality control to streamline operations from shop floor to finance.

Sage 100cloud is a cloud-based ERP solution designed for small to midsize businesses, with robust accounting and manufacturing modules tailored for discrete and repetitive manufacturing environments. It handles core financials like GL, AP/AR, and payroll alongside inventory control, bill of materials (BOM), production scheduling, and shop floor management. The platform supports real-time data visibility and customizable reporting to streamline operations for manufacturers.

Acctivate is a QuickBooks-integrated inventory and operations management software designed for small distributors, manufacturers, and warehouses. It extends QuickBooks' accounting capabilities with advanced inventory control, bill of materials (BOMs), assemblies, work orders, lot/serial tracking, and multi-location support tailored for light manufacturing processes. While not a standalone ERP, it bridges the gap for small manufacturers needing production planning without overhauling their accounting setup.