
GITNUXSOFTWARE ADVICE
General KnowledgeTop 10 Best Second Software of 2026
Compare second software options like Obsidian, Roam Research, and Capacities for note workflows and structure tradeoffs that fit team needs.
How we ranked these tools
Vendors set the topic, but our editors set the inclusion criteria and the evaluation framework before research starts.
Agents extract product evidence with provenance, then collect written reviews and transcribe video reviews and podcasts.
Framework: Features 40% · Ease 30% · Value 30%
Gitnux may earn a commission through links on this page — this does not influence rankings. Editorial policy
Roam Research is the best choice for teams who want a shared, living linked knowledge graph, because block-level backlinks keep context up to date as notes evolve. Obsidian is the better second pick for people who need local-first, portable Markdown since the backlinks and graph view map relationships instantly.
Editor’s top 3 picks
Three quick recommendations before you dive into the full comparison below — each one leads on a different dimension.
Roam Research
Block-level backlinks create a living reference network that updates as notes are edited.
Best for: Fits when teams need a shared linked knowledge graph for ongoing research and decision context.
Capacities
Editor pickEnvironment-scoped workflows keep the same object model consistent across multiple operational contexts.
Best for: Fits when teams need governed automation with an API-backed object model.
Obsidian
Editor pickBacklinks plus the graph view provide immediate relationship visualization from plain Markdown links.
Best for: Fits when teams want a local-first knowledge system that stays text-based and plugin-extensible.
Comparison Table
Roam Research
vertical specialistNetworked thought tool using block-level bidirectional links and daily notes for interconnected note-taking.
Block-level backlinks create a living reference network that updates as notes are edited.
Roam Research fits teams that want shared thinking captured as linked blocks, with navigation that follows references rather than page titles. Core capabilities include nested blocks, backlinks, graph-driven browsing, and search across the note database. The automation story is strongest through its API for manipulating pages and blocks and through integrations that move content between Roam and other tools. The data structure is block-first, which makes structured capture and relationship mapping practical for long-lived knowledge.
A tradeoff is that Roam blocks behave differently from traditional documents, so teams used to file folders and page templates often need time to standardize writing habits. Another tradeoff is that governance features like granular role-based access and enterprise audit logging are not positioned as Roam’s primary focus, which affects how much control large orgs can enforce. Roam works best for ongoing research notes, product decision logs, and meeting insights that must stay connected as new work references old context. It is less suitable as the single system of record for strictly regulated processes that require formal approval workflows and detailed administrative oversight.
- +Bidirectional backlinks connect concepts without manual index maintenance
- +Block-first editing supports nested structure and fine-grained linking
- +API enables programmatic page and block creation for automations
- +Daily notes and search make recurring capture practical
- –Graph-style thinking can slow standardized documentation rollout
- –Governance controls for large teams are limited compared with enterprise DMS
- –Automation typically requires custom scripts for non-trivial workflows
- –Export and sync patterns can feel fragmented across integrations
Product and program teams
Maintain decision context across sprints
Faster reuse of past decisions
Engineering teams
Track architecture notes and dependencies
Less time hunting for rationale
Show 2 more scenarios
Research and ops teams
Organize findings from recurring investigations
Consistent audit trail for thinking
Investigations are logged in daily notes and cross-linked to methods and results as new work arrives.
Enablement and internal teams
Curate playbooks from scattered notes
Playbooks stay connected to evidence
Teams refactor raw notes into connected block structures using internal links and backlinks.
Best for: Fits when teams need a shared linked knowledge graph for ongoing research and decision context.
Capacities
vertical specialistObject-based personal knowledge manager that treats notes as typed objects with relational properties.
Environment-scoped workflows keep the same object model consistent across multiple operational contexts.
Capacities models work as objects with relationships, then ties those objects to workflows, automation rules, and environment settings. Admins can control access at the workspace level and manage who can view or modify resources across linked items. The automation layer uses event-driven triggers and scheduled runs to move work state and keep linked systems aligned. The API supports automation and state synchronization so external tools can create, update, and track the same objects that the UI uses.
A key tradeoff is that the environment and workflow structure requires upfront configuration to avoid fragmented conventions across teams. It fits teams that need a governed, repeatable process across multiple external tools, such as syncing project states to issue trackers and operational runbooks. It also fits internal platforms teams that want deterministic automation outcomes tied to shared objects instead of ad hoc task lists.
- +Environment-specific configuration ties workflows to the right context
- +API supports object lifecycle automation and cross-system synchronization
- +Event-driven automation reduces manual state updates
- +Workspace roles and activity history support basic governance
- –Initial setup cost is high when teams need shared conventions
- –Automation rule modeling can be slower than simple checklist tools
- –Complex integrations may require custom mapping work
Platform engineering teams
Provision environments with workflow-linked objects
Fewer manual cutovers
IT ops teams
Track operational runbooks and actions
Consistent runbook execution
Show 1 more scenario
RevOps and project ops teams
Sync pipeline work to external systems
Reduced reporting drift
Automations mirror object updates to connected tools to keep execution status aligned.
Best for: Fits when teams need governed automation with an API-backed object model.
Obsidian
SMBLocal-first markdown note-taking app with bidirectional linking and graph view for personal knowledge management.
Backlinks plus the graph view provide immediate relationship visualization from plain Markdown links.
Obsidian turns notes into a navigable knowledge base by storing each note as a Markdown file in a local vault. The core differentiator is bidirectional graph linking and lightweight views that let teams connect work items, decisions, and drafts without a rigid workflow schema.
For integration and automation, Obsidian supports file system operations, community plugins, and extensibility through its plugin API. For collaboration and administration, teams rely on synced vault access patterns and carefully managed device state rather than built-in org-wide RBAC and audit logs.
- +Markdown file vault keeps content portable and recoverable with standard tooling
- +Link graph and backlinks create fast context switching across scattered notes
- +Granular search across the vault supports retrieval without building custom indexes
- +Plugin API enables automation through custom commands and event hooks
- –Team governance needs extra process because vault sharing lacks native RBAC
- –Large knowledge graphs can feel sluggish without curation and indexing discipline
- –Cross-device conflicts require operational care when multiple people edit the same vault
- –Automation quality depends heavily on community plugins and maintenance cadence
Research notebook keepers
Trace sources to related lab notes
Traceable materials across topics
Idea developers
Map relationships across subject notes
Navigable connection view
Show 2 more scenarios
Independent writers
Draft nonfiction using connected sources
Linked workspace for drafting
Writers connect source notes to outlines and draft text for consistent reference retrieval while composing.
Individuals managing routines
Capture recurring tasks with templates
More consistent capture
Users create templates and daily notes to record checklists and reflections in repeatable note structures.
Best for: Fits when teams want a local-first knowledge system that stays text-based and plugin-extensible.
Heptabase
vertical specialistVisual whiteboard note-taking app that organizes markdown notes as cards on infinite canvases.
Templates and reusable page components that enforce consistent spec and handoff formats across a growing knowledge graph.
Heptabase is a knowledge and workflow workspace built around pages, blocks, and graph-style navigation for teams that need structured collaboration beyond plain documentation. Core capabilities include interconnected knowledge pages, task and project views, and lightweight automation through automations and smart templates.
- +Graph navigation and backlinking reduce time spent hunting related decisions
- +Reusable templates keep meeting notes, specs, and handoffs consistently formatted
- +Automations support recurring maintenance tasks for knowledge hygiene
- +Embeds and block-based page editing fit mixed content workflows
- –Admin controls do not provide audit-log depth expected for regulated governance
- –Automation coverage is limited compared with API-first workflow orchestration tools
Process documentation teams
Connect procedures with scenario context
Connected playbook reference
Students and learners
Organize course notes by concept links
Topic-based organization
Show 2 more scenarios
Researchers doing synthesis
Map literature sources and themes visually
Connected ideas map
Researchers collect sources and annotations, then connect claims and themes on a visual board for synthesis.
Meeting coordinators
Link decisions to background notes
Traceable decision records
Coordinators record meeting notes and connect follow-up context so decisions remain tied to supporting information.
Best for: Fits when teams need a structured knowledge workspace with light automation, not infrastructure-level continuity controls.
Logseq
vertical specialistOpen-source local-first outliner with bidirectional links, journal mode, and Markdown or Org-mode file storage.
Block-level linking and graph visualization across Markdown pages.
Logseq represents content as blocks, then links blocks and pages into a graph you can navigate without leaving the editor. Daily notes, TODOs, and page properties allow structured capture, while built-in queries can filter notes by property values. Local storage plus optional syncing helps teams keep editing active when network access is limited. Export paths like HTML and Markdown provide a predictable way to move content out of the app.
- +Block-first editor keeps context attached to every note fragment
- +Local-first Markdown storage supports offline work and version history
- +Properties and queries enable structured searching across pages
- +Plugin ecosystem supports automation and custom views
- –Graph navigation can add friction for users used to linear docs
- –Team governance controls like RBAC and audit logs are limited
- –Higher effort to standardize templates across large teams
- –Complex automations often require external scripting around files
Engineering knowledge teams
Link specs to incident follow-ups
Faster root-cause document reuse
Product research teams
Maintain interview insights as connected notes
Cleaner synthesis for reviews
Show 1 more scenario
Technical consultants
Ship client-ready docs from exports
Consistent deliverables per engagement
Text-first storage enables repeatable documentation structure and export to shareable formats.
Best for: Fits when teams need block-based knowledge capture with offline editing and text-first exports.
Tana
SMBAI-enhanced outliner with supertags, compound nodes, and built-in database views for knowledge work.
Record-level linking across notes and tasks, with saved views that act like persistent dashboards over the same graph.
Tana turns scattered knowledge into connected workspaces by letting notes, tasks, and references form a navigable graph. Its core workflow centers on linked records, saved views, and rules that keep “what depends on what” consistent as information changes.
- +Graph-native linking keeps context attached to evolving work items
- +Saved views make recurring workflows repeatable without rebuilds
- +Webhook and API access support integration to external automation
- +Workspace roles support controlled collaboration across projects
- –Complex graph structures take time to design and maintain
- –Automation coverage depends on what events and fields are exposed via API
- –Admin controls are limited for fine-grained governance beyond roles
- –Large knowledge bases can feel slow when queries span many links
Developer documentation teams
Relate specs and tasks to decisions
Context-linked documentation
Operations and workflow teams
Route intake changes through steps
Consistent triage follow-up
Show 2 more scenarios
Researchers and analysts
Maintain connected evidence for claims
Navigable evidence base
Researchers store sources, findings, concepts, and references as connected records to keep evidence tied to claims.
Project managers
Track decisions across recurring meetings
Traceable decision follow-through
Teams link meeting notes to people, projects, decisions, and follow-up tasks with supporting evidence attached.
Best for: Fits when teams need graph-linked knowledge and lightweight automation to keep runbooks and decisions connected.
Standard Notes
enterpriseEnd-to-end encrypted note-taking app focused on privacy and long-term data retention.
End-to-end encryption with per-item encrypted content storage drives privacy-focused sync for notes and attachments.
Standard Notes creates and stores encrypted notes, tasks, and attachments with end-to-end encryption for content. Its core capability is a client-first data layer built around encrypted note items and search behavior tied to that model.
- +End-to-end encrypted notes reduce exposure to server-side reads
- +Cross-platform apps keep one encrypted collection usable across devices
- +Extensible editor and file handling via extensions
- +Offline-first editing works with background sync and conflict resolution
- –Team workflows lack native RBAC, shared workspaces, and audit logs
- –Encrypted search limits indexable content for quick global queries
- –Automation and API surface for provisioning stays minimal for integrations
- –Migration is primarily export-driven rather than schema-aware
Users managing private docs
Store attachments within encrypted notes
Encrypted files with context
Markdown-focused writers
Write structured encrypted Markdown
Consistent encrypted Markdown
Show 2 more scenarios
Privacy-conscious individuals
Maintain a private note vault
Private synchronized vault
Users store personal records with encryption designed to keep readable content away from the service.
Knowledge workers and students
Capture ideas in searchable personal notes
Organized personal knowledge
Users organize reference material with tags and folders so notes stay searchable and easier to revisit.
Best for: Fits when small teams or individuals need encrypted notes across devices without heavy admin or integration demands.
Craft
SMBDocument-centric note app with blocks, daily notes, and native Apple-platform design.
Element-based content modeling with reusable blocks lets teams standardize complex page layouts across environments.
Craft is a visual site and workflow builder that converts page structure into maintainable components and deployable templates. It supports real content modeling with fields, collections, and reusable blocks so teams can standardize formats instead of duplicating pages.
- +Component-based templates reduce repeated page structure across campaigns
- +Content types with fields and relations keep editorial formats consistent
- +API access supports scripted content sync and external integrations
- +Role permissions map directly to publish and content management tasks
- –Complex content schemas can require more governance to stay consistent
- –Workflow automation is strongest for content states, not cross-system orchestration
Small project teams
Turn decisions into shareable documents
Readable decision records
Consultants and writers
Draft reports without switching tools
Presentation-ready drafts
Show 2 more scenarios
Researchers and analysts
Arrange sources into structured pages
Clear research summaries
Researchers collect findings and references, then organize them into structured pages or a visual canvas layout.
Content and support teams
Maintain help-center articles from source
Reusable knowledge articles
Teams refine captured ideas into structured knowledge articles that stay maintainable as source content evolves.
Best for: Fits when a team needs a structured editorial content model with reusable templates and an API for integrations.
Reflect
vertical specialistCloud-based note-taking app with bidirectional links, daily notes, and integrated AI assistance.
Prompt-driven daily writing that can automatically convert new notes into structured summaries for later reuse.
Reflect is a journaling and knowledge capture app with a daily writing loop, then an automated system that turns notes into reusable summaries. It supports structured prompts, tags, and backlinks so written artifacts remain navigable across time.
- +Daily capture flow reduces blank-page friction with guided prompts
- +Backlinks and tagging keep long note histories searchable
- +API enables external note creation and content syncing
- +Summaries can be regenerated from source notes without rewriting
- –Admin and governance controls are thin for multi-team environments
- –Automation is narrower than task workflow tools for operational execution
- –Data portability can require format-specific export paths
- –Complex branching knowledge workflows need external coordination
Journalers and knowledge workers
Keep a recurring daily writing practice
Searchable journal history
Researchers and students
Collect clipped sources into organized notes
Searchable reference workspace
Show 2 more scenarios
Project collaborators
Convert meeting transcripts into action notes
Searchable action tracking
Teams turn audio or transcript material into editable notes with timestamps, decisions, and follow-up items.
Lifelong learners
Build a durable note library with backlinks
Connected reference library
Knowledge workers organize notes with backlinks, tags, folders, and nested pages for easier browsing and revisiting.
Best for: Fits when teams need consistent personal-to-team knowledge capture with light automation and external syncing.
Amplenote
SMBNote-taking app that integrates notes, tasks, and calendar scheduling into a single workflow.
Inbox-first capture workflow that routes items into linked notes and follow-ups without requiring workflow builders.
Amplenote pairs a note-taking workspace with a structured inbox workflow that turns drafts into linked knowledge and tasks. The core capabilities include Markdown notes, bidirectional linking, inline block relationships, and a search experience built around tags and cross-references.
- +Block-based notes with strong Markdown editing and predictable formatting
- +Bidirectional links make cross-topic navigation fast inside large workspaces
- +Structured inbox workflow reduces missed follow-ups during research cycles
- +Search across tags and links supports quick retrieval of prior decisions
- –Limited API and automation depth compared with tools that expose integrations
- –Team governance controls like RBAC and audit logs are not its main strength
- –Import and export handle migration, but state synchronization is manual
- –Advanced workflow logic needs external tooling rather than native rules
Individuals time-block planning
Link time blocks to tasks and notes
Daily plan with context
GTD workflow users
Capture tasks and review next actions
Reviewable next actions
Show 2 more scenarios
People needing contextual reminders
Attach recurring alerts to project notes
Contextual reminder prompts
Users create reminders and recurring alerts so the prompts appear alongside the information needed to act.
Knowledge workers and researchers
Maintain a linked research note base
Searchable related note network
Researchers collect research notes and connect them using links, backlinks, and tags for navigable relationships.
Best for: Fits when teams want structured note linking and inbox-to-task flow with minimal admin overhead.
Conclusion
After evaluating 10 second software, Roam Research stands out as our overall top pick — it scored highest across our combined criteria of features, ease of use, and value, which is why it sits at #1 in the rankings above.
Use the comparison table and detailed reviews above to validate the fit against your own requirements before committing to a tool.
How to Choose the Right Second Software
Second software for teams has shifted from simple document storage to shared knowledge workspaces that keep links, structure, and reuse attached to the content itself. This guide covers Logseq, Roam Research, Capacities, Obsidian, Tana, Heptabase, Reflect, Craft, Standard Notes, and Amplenote, based on their block-first or content-modeling mechanisms.
The tool reviews leading into this page established how each product handles offline editing, graph navigation, template reuse, and encryption tradeoffs. The comparison then focuses on integration depth, schema or content structure consistency, and automation or API surface where those capabilities exist, since those differences decide whether teams can govern knowledge as work changes.
Integration, structure, and automation controls for Second Software
For teams, the deciding factors shift to integration depth, content modeling consistency, and the amount of automation exposed through an API. Capacities ties workflows to an API-backed object model and environment-specific configuration, while Craft uses element-based content modeling with fielded relations and reusable blocks for consistent formats.
Block-first linking and graph navigation behavior
Logseq and Roam Research both anchor navigation in block-level backlinks, so relationships update as edits happen instead of relying on manual indexes. Logseq’s block-first editor keeps context attached to every note fragment, while Roam Research’s bidirectional backlinks connect concepts with less index maintenance.
Content portability and text-first storage
Obsidian’s Markdown file vault keeps content portable with standard tooling, and its backlinks plus graph view provide relationship visualization from plain Markdown links. Logseq also uses local-first Markdown storage for offline work, which supports version history without shifting content into proprietary-only objects.
API-backed automation and environment-scoped workflow control
Capacities is built around environment-scoped workflows that keep the same object model consistent across operational contexts, and it offers an API for object lifecycle automation and cross-system synchronization. Craft supports an API for integrations, but its automation emphasis centers on content states rather than orchestration-level execution.
Reusable templates and repeatable runbook formats
Heptabase enforces consistent spec and handoff formats with templates and reusable page components across a growing graph. Tana provides saved views that act like persistent dashboards over the same graph, which helps recurring workflows repeat without rebuilding views.
Content schema governance via fields and relations
Craft uses content types with fields and relations to keep editorial formats consistent across teams, which reduces format drift in complex page layouts. Capacities enforces consistency by binding workflow configuration to an environment-specific object model, which keeps governance aligned with the right context.
Security and encryption depth for shared workspaces
Standard Notes includes end-to-end encryption with per-item encrypted content storage, which reduces exposure to server-side reads for notes and attachments. Logseq and Roam Research prioritize knowledge navigation and local-first editing behaviors, and their team governance controls are limited compared with encrypted workspace needs.
How to choose Second Software by structure, integration, and admin depth
Integration and automation decide whether the workspace can act like an execution layer or only a documentation layer. Capacities is designed for API-driven object lifecycle automation, while Logseq, Roam Research, and Obsidian lean toward local-first knowledge capture with offline editing and text portability.
Select block-first linking if decisions must stay attached to the writing unit
Choose Logseq or Roam Research when shared context must update from backlinks as note blocks change, because each link updates the live network instead of requiring manual restructuring. Logseq keeps context attached to every note fragment in a block-first editor, while Roam Research relies on bidirectional backlinks that build a living reference network.
Choose text-vault portability when migration and offline work matter more than centralized governance
Choose Obsidian when the team needs Markdown file portability with a vault that stays recoverable with standard tooling, and uses plain Markdown links plus backlink graph views. Choose Logseq when offline editing and local-first Markdown storage are required, with version history available without moving everything into structured database objects.
Choose API-backed object models when workflows must synchronize across systems
Choose Capacities when environment-scoped workflows must remain consistent across multiple operational contexts and an API must automate object lifecycle events. Choose Craft when integrations are needed for content operations, but the primary standardization goal is element-based content modeling with reusable blocks and fielded relations.
Choose template-driven repetition when teams need consistent specs and handoffs
Choose Heptabase when reusable templates and page components must enforce consistent formats for meeting notes, specs, and handoffs as the graph grows. Choose Tana when saved views should act like persistent dashboards that keep recurring workflows repeatable over the same connected graph.
Choose encryption-first notes when sensitive content sharing must limit server-side exposure
Choose Standard Notes when end-to-end encrypted per-item storage must reduce exposure to server-side reads and attachments must follow the same encrypted model. Use it when team needs are mostly note sharing and cross-device access with minimal reliance on governance features like RBAC and audit logs.
Who needs Second Software that matches their knowledge-to-workflow path
Organizations also benefit when the workspace aligns with governance expectations like RBAC and audit logging, because some tools keep admin controls thin while others focus on knowledge capture and offline-first behavior.
Teams running decision logs that must stay navigable as notes evolve
Logseq and Roam Research update relationship context through block-level backlinks, so decision trails remain connected as edits happen.
Teams standardizing specs, handoffs, and meeting artifacts across many contributors
Heptabase provides templates and reusable components that enforce consistent spec and handoff formats, while Tana uses saved views to repeat recurring workflows over the same graph.
Teams coordinating operations with automation and cross-system synchronization
Capacities keeps workflows consistent through environment-scoped configuration and exposes an API for object lifecycle automation, while Craft focuses on content states with an API for integrations.
Small groups needing encrypted notes across devices with minimal admin overhead
Standard Notes combines cross-platform access with end-to-end encryption and per-item encrypted storage, which reduces server-side reads for notes and attachments.
Editorial teams that need structured page formats that stay consistent across pages
Craft’s element-based content modeling with reusable blocks and fielded content relations keeps editorial formats consistent across environments.
Common pitfalls when selecting Second Software
Other failures come from choosing a structured approach and underestimating setup and maintenance costs. Capacities can require higher initial setup cost for shared conventions, and Heptabase can require additional discipline because admin controls do not provide audit-log depth expected for regulated governance.
Selecting a graph tool and then expecting enterprise-grade RBAC and audit-log governance out of the box
Logseq and Roam Research provide limited governance controls for large teams compared with enterprise DMS, so multi-team compliance requirements need extra planning for access policies and activity tracking.
Choosing template or schema standardization without budgeting time for content modeling decisions
Craft’s complex content schemas can require governance to stay consistent, while Heptabase requires template design work to maintain consistent spec and handoff formats as the graph expands.
Buying for automation first without validating event coverage and API exposure for the specific workflow
Capacities offers API-backed object lifecycle automation, but Tana and Reflect automate narrower knowledge capture paths because automation coverage depends on what events and fields are exposed via their APIs.
Assuming encrypted search and indexable content will support the same fast global queries as unencrypted note graphs
Standard Notes limits indexable content for quick global queries because encrypted search constrains what can be indexed, so requirements for broad cross-note search need a tool fit check.
How We Selected and Ranked These Tools
We evaluated Logseq, Roam Research, Capacities, Obsidian, Tana, Heptabase, Reflect, Craft, Standard Notes, and Amplenote on documented features, ease of daily operation, and overall value for team knowledge work. Features made up 40% of the score, and ease made up 30% with value taking the final 30% so the ranking reflects both capability and day-to-day usability.
Logseq earned the top position because its block-first editor keeps context attached to every note fragment, its local-first Markdown storage supports offline work and version history, and its graph visualization connects knowledge without forcing users into schema-heavy modeling. Tools like Roam Research scored highly for bidirectional block-level backlinks, but Logseq’s editing friction and offline-first behavior translated better into sustained team use.
Frequently Asked Questions About Second Software
How do Logseq and Obsidian handle offline-first editing and sync consistency across devices?
Which tools expose a programmable API for automation, and how do Capacities and Tana differ in integration approach?
When a team needs stronger admin governance and audit visibility, how does Capacities compare with Heptabase?
What breaks if a team relies on file-level sync instead of an app-level model when using Obsidian or Logseq?
How do Roam Research and Tana support linked knowledge that stays navigable as data changes?
Which tools are better suited for team runbooks that need environment-scoped workflows, and what configuration model supports that?
How do Standard Notes and Reflect differ in handling data confidentiality and automated content reuse?
When does Logseq’s plugin system and graph visualization help more than Heptabase templates and reusable components?
What integration pitfalls appear when combining external tooling with graph apps like Amplenote and Craft?
Tools reviewed
Primary sources checked during evaluation.
Referenced in the comparison table and product reviews above.
Funding and competing interests
This study was co-funded by several of the vendors assessed in it. No single vendor funded it. Funders could propose the market studied.
They had no role in selecting vendors, setting or weighting criteria, analysing data or drawing conclusions, and they received the same factual-accuracy check as every other vendor assessed.
Market definition, inclusion rules and criteria weights were fixed by an editor before research began and did not change afterwards. Editorial process →
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