Top 10 Best Non-Profit Accounting Software of 2026

Aplos is a cloud-based accounting software designed specifically for nonprofits, churches, and faith-based organizations, offering fund accounting to track restricted and unrestricted funds effortlessly. It integrates donor management, online giving, budgeting, and automated reporting including IRS Form 990 preparation. With bank reconciliation, payroll integration, and mobile access, it streamlines financial operations while ensuring compliance with nonprofit standards.

Blackbaud Financial Edge NXT is a cloud-based financial management platform tailored for nonprofits, offering robust fund accounting, budgeting, accounts payable/receivable, and general ledger functionalities. It excels in handling complex nonprofit financial structures like restricted funds, grants, and allocations with high accuracy and compliance. The software integrates seamlessly with Blackbaud's ecosystem, including Raiser's Edge NXT for fundraising, providing end-to-end visibility into financial and donor data.

Sage Intacct is a cloud-based financial management platform tailored for mid-market organizations, including non-profits, providing robust fund accounting, grant management, and donor tracking capabilities. It enables precise tracking of restricted and unrestricted funds, automated grant lifecycle management, and compliance with nonprofit-specific standards like FASB ASC 958. The software offers multidimensional reporting and seamless integrations with CRM systems like Salesforce for streamlined fundraising operations.

QuickBooks Enterprise Nonprofit is a robust, scalable accounting platform tailored for mid-to-large nonprofit organizations, enabling fund accounting through class and location tracking for multiple funds and programs. It offers specialized tools for donor management, pledge tracking, grant administration, and compliance reporting including Form 990 support. With advanced inventory, payroll integration, and customizable dashboards, it streamlines financial operations while integrating with hundreds of third-party apps.

MIP Fund Accounting is a robust, enterprise-grade accounting software tailored for nonprofits, government agencies, and organizations managing grants and funds. It excels in fund accounting, enabling precise tracking of restricted and unrestricted funds, multi-entity consolidation, and compliance with FASB, GASB, and OMB standards. The platform offers modules for general ledger, accounts payable/receivable, payroll, budgeting, and advanced reporting to support complex financial operations.

Cougar Mountain Denali Fund is a robust, on-premises accounting software suite tailored for non-profit organizations, specializing in fund accounting, donor management, and grant tracking. It supports multi-fund and multi-entity structures, general ledger, accounts payable/receivable, payroll, and compliance reporting aligned with FASB and GAAP standards for non-profits. The software emphasizes customization and scalability for mid-sized non-profits handling complex financials.

Araize X3 Nonprofit+ is a cloud-based accounting platform specifically designed for nonprofit organizations, offering fund accounting, grant management, donor tracking, and budgeting tools. It supports multi-entity operations, real-time financial dashboards, and compliance with FASB and GAAP standards for nonprofits. The software integrates payroll, expense management, and customizable reporting to streamline financial operations for mission-driven organizations.

AccuFund is a specialized fund accounting software designed for non-profits, governments, and public sector organizations, providing robust tools for multi-fund accounting, grant management, and donor tracking. It ensures compliance with FASB and GASB standards through features like encumbrance accounting, budgeting, and customizable reporting. The solution supports both on-premise and hosted deployments, making it suitable for organizations needing detailed financial oversight without enterprise-level complexity.

SoftEdge Fund$EDGE is a Windows-based desktop accounting software tailored for non-profits, churches, schools, and ministries, specializing in fund accounting and donor management. It handles multi-fund tracking, pledge fulfillment, budgeting, financial statements, and compliance reporting like Form 990 preparation. The solution supports batch transaction entry for donations and integrates with select payroll and banking services, making it suitable for organizations needing precise non-profit financial controls.

Fund EZ is a cloud-based accounting software tailored for non-profits, churches, and faith-based organizations, specializing in fund accounting to track restricted and unrestricted funds separately. It provides tools for donor management, budgeting, invoicing, payroll integration, and customizable financial reporting compliant with non-profit standards like FASB. The platform emphasizes ease of use with real-time dashboards and mobile access, making it suitable for organizations without dedicated accounting staff.