Top 10 Best Ngo Accounting Software of 2026

Aplos is a cloud-based accounting software tailored specifically for nonprofits, churches, and NGOs, offering fund accounting, donor management, and financial reporting designed to meet 501(c)(3) compliance needs. It streamlines donation tracking, budgeting, payroll, and online giving integrations, allowing organizations to manage multiple funds effortlessly. With robust automation and customizable dashboards, Aplos helps NGOs focus on their mission rather than manual bookkeeping.

Blackbaud Financial Edge NXT is a cloud-based financial management platform tailored for nonprofit organizations, offering robust fund accounting, general ledger, budgeting, accounts payable/receivable, and grant management. It excels in handling complex nonprofit financial needs like restricted fund tracking and multi-entity consolidations. Seamless integration with Blackbaud's Raiser's Edge NXT enhances fundraising and donor management workflows.

Sage Intacct is a robust cloud-based financial management platform tailored for mid-sized to large organizations, including NGOs, with specialized modules for fund accounting, grant management, and donor tracking. It enables nonprofits to manage complex financial structures across multiple entities, funds, and programs while ensuring compliance with standards like FASB and GAAP. The software provides real-time dashboards, advanced reporting, and seamless integrations with CRM systems like Salesforce.

MIP Fund Accounting, offered by Community Brands, is a robust financial management platform designed specifically for nonprofits, NGOs, and government organizations. It provides advanced fund accounting to track restricted and unrestricted funds, manage grants throughout their lifecycle, handle budgeting, payroll, and procurement. The software ensures compliance with standards like FASB and GASB through customizable reporting and analytics.

QuickBooks Online Nonprofit is a cloud-based accounting platform tailored for nonprofits, enabling fund accounting, donor and grant tracking, and compliance reporting like Form 990. It supports multiple funds through class and location tracking, automates bank reconciliations, and integrates with CRM tools for streamlined operations. Ideal for organizations needing robust financial management without fully specialized nonprofit software.

NetSuite for Nonprofits is a comprehensive cloud-based ERP platform tailored for nonprofit organizations, offering fund accounting, grant lifecycle management, donor relationship tracking, and program management. It provides real-time visibility into restricted funds, multi-entity consolidation, and compliance reporting to meet standards like FASB and IFRS for NGOs. The solution integrates financials, CRM, and operations to streamline nonprofit workflows and support scalable growth.

Araize FastFund Accounting is a cloud-based nonprofit accounting software tailored for NGOs and nonprofits, specializing in fund accounting to track restricted and unrestricted funds. It offers grant management, donor tracking, budgeting, and customizable reporting compliant with FASB and GAAP standards. The platform integrates CRM-like features for fundraising and provides real-time financial insights accessible from any device.

Xero is a cloud-based accounting software primarily designed for small to medium-sized businesses, offering invoicing, bank reconciliation, expense tracking, payroll, and financial reporting. For NGOs, it provides a user-friendly platform for core accounting tasks with multi-currency support and project tracking that can adapt to basic grant management. While it lacks native fund accounting or donor management, its extensive app marketplace allows integrations for non-profit-specific needs like compliance reporting.

Wave Accounting is a cloud-based platform providing free invoicing, accounting, and expense tracking primarily designed for small businesses and freelancers. It enables users to manage income, expenses, generate basic financial reports, and handle payroll or payments via add-ons. For NGOs, it offers simple bookkeeping but lacks specialized nonprofit features like fund accounting or grant tracking.

Manager.io is a versatile, open-source accounting software offering invoicing, expense tracking, bank reconciliation, inventory management, and customizable reporting for small businesses and organizations. It supports both desktop (free forever) and cloud deployments, with multi-currency and offline capabilities. For NGOs, it handles basic financials well but requires custom setups for nonprofit-specific needs like fund tracking.