Top 10 Best Healthcare Accounting Software of 2026

Athenahealth is a comprehensive cloud-based platform providing electronic health records (EHR), practice management, and advanced revenue cycle management (RCM) solutions tailored for healthcare providers. It excels in healthcare accounting by automating billing, claims processing, denial management, patient payments, and financial reporting to optimize revenue capture and compliance. With AI-driven insights and seamless integration across clinical and financial workflows, it supports practices from small offices to large enterprises in streamlining administrative tasks and improving financial performance.

Kareo is a cloud-based healthcare platform specializing in revenue cycle management and medical billing for independent practices. It handles accounting tasks like claims processing, payment posting, AR management, and financial reporting with HIPAA-compliant tools. Integrated with EHR and practice management, it automates workflows to optimize cash flow and reduce denials in healthcare settings.

AdvancedMD is a cloud-based, all-in-one practice management and EHR platform with robust healthcare accounting features, including automated medical billing, revenue cycle management, and financial reporting tailored for medical practices. It handles claims submission, payment posting, denial management, and patient collections while integrating seamlessly with clinical workflows. The software provides customizable dashboards for tracking accounts receivable, profitability, and compliance with healthcare regulations like HIPAA.

Sage Intacct is a cloud-based ERP solution designed for mid-market healthcare organizations, providing robust financial management tools including general ledger, accounts payable/receivable, and specialized healthcare modules for revenue cycle management, grant accounting, and multi-entity consolidation. It excels in handling complex payer contracts, HIPAA-compliant reporting, and integrations with EHR systems like Epic and Cerner for seamless billing and revenue recognition. The platform offers real-time dashboards and automation to streamline financial operations in dynamic healthcare environments.

Oracle NetSuite is a cloud-based ERP platform providing comprehensive financial and accounting management for healthcare organizations, including general ledger, accounts payable/receivable, and revenue cycle management. It supports complex billing for insurance claims, patient services, and multi-entity operations, with integrations for EHR systems and compliance tools for HIPAA and GAAP. NetSuite offers real-time reporting and analytics to handle healthcare-specific financial challenges like contract accounting and reimbursements.

QuickBooks Enterprise is Intuit's flagship accounting software tailored for mid-to-large businesses, providing comprehensive financial management tools including invoicing, payroll, inventory tracking, and advanced reporting. For healthcare accounting, it excels in managing multi-location clinics, tracking medical supplies as inventory, and generating compliance-ready financial reports. While versatile and scalable, it requires third-party integrations for specialized healthcare needs like patient billing and insurance claims processing.

eClinicalWorks is a cloud-based EHR and practice management platform with integrated healthcare accounting features, including billing, claims management, and revenue cycle optimization. It automates electronic claims submission, tracks accounts receivable, generates financial reports, and handles patient payments while ensuring HIPAA compliance. Designed for medical practices, it streamlines financial workflows alongside clinical operations to improve cash flow and reduce administrative burdens.

NextGen Healthcare offers an integrated electronic health record (EHR) and practice management platform with strong financial modules designed for healthcare providers, focusing on revenue cycle management, billing, and accounting workflows. It handles patient billing, claims processing, payer reimbursements, and financial reporting tailored to medical practices. While not a standalone accounting tool, its healthcare-specific financial capabilities integrate seamlessly with clinical operations to streamline cash flow and compliance.

DrChrono is a cloud-based electronic health record (EHR) and practice management platform with integrated healthcare accounting tools focused on medical billing, claims processing, and revenue cycle management. It automates electronic claims submission to major clearinghouses, ERA auto-posting, denial management, and patient payment collection. The software provides financial reporting, aging analysis, and integrations with tools like QuickBooks for comprehensive practice financial oversight.

CureMD is a cloud-based EHR and practice management platform with integrated healthcare accounting features, focusing on medical billing, revenue cycle management, claims processing, and financial reporting for medical practices. It automates tasks like insurance claims submission, payment posting, AR tracking, and compliance reporting to streamline financial workflows alongside clinical operations. While versatile for small to mid-sized practices, it is not a dedicated accounting solution and relies on its broader PM suite for financial capabilities.