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Healthcare Medicine

Top 10 Best Gastroenterology EHR Software of 2026

Top 10 Gastroenterology EHR software: compare features, pricing & choose best fit. Explore now.

Min-ji Park

Min-ji Park

Feb 11, 2026

10 tools comparedExpert reviewed
Independent evaluation · Unbiased commentary · Updated regularly
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Gastroenterology EHR software is critical for optimizing clinical workflows, ensuring precise documentation of complex procedures, and improving patient care—especially amid evolving regulatory and interoperability demands. With a diverse array of tools ranging from specialty-specific platforms to enterprise solutions, this curated list narrows down the leading options to empower practices.

Quick Overview

  1. 1#1: gGastro - Specialty-specific cloud-based EHR and practice management software tailored for gastroenterology with AI-powered clinical decision support.
  2. 2#2: Provation MD - Leading endoscopy documentation and reporting software that integrates seamlessly with EHRs for gastroenterology procedures.
  3. 3#3: Casetabs - Cloud-native platform for gastroenterology procedure documentation, coding, and quality reporting with EHR integration.
  4. 4#4: EndoSoft - Comprehensive endoscopy information management system designed for gastroenterologists with HIS/EHR interoperability.
  5. 5#5: Epic Systems - Enterprise EHR platform featuring robust gastroenterology workflows, endoscopy modules, and advanced analytics.
  6. 6#6: Oracle Health - Enterprise EHR solution with specialized gastroenterology tools for procedural documentation and patient management.
  7. 7#7: NextGen Healthcare - Ambulatory EHR with customizable gastroenterology templates and integrated endoscopy reporting capabilities.
  8. 8#8: athenahealth - Cloud-based EHR offering gastroenterology-specific content, billing, and population health management.
  9. 9#9: eClinicalWorks - EHR system with dedicated gastroenterology module for endoscopy scheduling and procedure documentation.
  10. 10#10: Veradigm - EHR and practice management platform supporting specialty workflows for gastroenterology practices.

We evaluated and ranked these tools based on specialized features like endoscopy documentation and AI-driven clinical support, ease of integration with existing systems, user experience, and long-term value, ensuring relevance for modern gastroenterology practices.

Comparison Table

Gastroenterology practices face unique challenges, making a tailored EHR system critical to efficiency and patient care. This comparison table evaluates top tools including gGastro, Provation MD, Casetabs, EndoSoft, Epic Systems, and others, assessing features like workflow integration, specialty-specific templates, and reporting capabilities. Readers will discover how each solution aligns with their practice’s needs to make informed, strategic choices.

1gGastro logo9.7/10

Specialty-specific cloud-based EHR and practice management software tailored for gastroenterology with AI-powered clinical decision support.

Features
9.8/10
Ease
9.5/10
Value
9.4/10

Leading endoscopy documentation and reporting software that integrates seamlessly with EHRs for gastroenterology procedures.

Features
9.6/10
Ease
8.7/10
Value
8.4/10
3Casetabs logo6.2/10

Cloud-native platform for gastroenterology procedure documentation, coding, and quality reporting with EHR integration.

Features
5.8/10
Ease
7.5/10
Value
6.0/10
4EndoSoft logo8.4/10

Comprehensive endoscopy information management system designed for gastroenterologists with HIS/EHR interoperability.

Features
9.2/10
Ease
7.8/10
Value
8.0/10

Enterprise EHR platform featuring robust gastroenterology workflows, endoscopy modules, and advanced analytics.

Features
9.3/10
Ease
7.2/10
Value
7.9/10

Enterprise EHR solution with specialized gastroenterology tools for procedural documentation and patient management.

Features
9.2/10
Ease
6.8/10
Value
7.4/10

Ambulatory EHR with customizable gastroenterology templates and integrated endoscopy reporting capabilities.

Features
9.1/10
Ease
7.4/10
Value
7.9/10

Cloud-based EHR offering gastroenterology-specific content, billing, and population health management.

Features
8.7/10
Ease
8.2/10
Value
7.8/10

EHR system with dedicated gastroenterology module for endoscopy scheduling and procedure documentation.

Features
8.3/10
Ease
6.9/10
Value
7.6/10
10Veradigm logo7.5/10

EHR and practice management platform supporting specialty workflows for gastroenterology practices.

Features
7.8/10
Ease
7.0/10
Value
7.2/10
1
gGastro logo

gGastro

specialized

Specialty-specific cloud-based EHR and practice management software tailored for gastroenterology with AI-powered clinical decision support.

Overall Rating9.7/10
Features
9.8/10
Ease of Use
9.5/10
Value
9.4/10
Standout Feature

Interactive anatomical body diagrams for precise, visual endoscopy procedure documentation and report generation

gGastro by ModMed is a cloud-based, specialty-specific EHR platform tailored for gastroenterology practices, offering streamlined workflows for endoscopy procedures, patient management, and compliance reporting. It features interactive anatomical diagrams, voice-enabled documentation, and seamless integration with practice management and revenue cycle tools. Designed to enhance efficiency in GI clinics, it supports MIPS quality measures, telehealth, and mobile access for on-the-go charting.

Pros

  • Highly specialized GI templates and endoscopy reporting tools
  • Intuitive mobile app and voice dictation for quick documentation
  • Strong MIPS compliance and revenue cycle integration

Cons

  • Premium pricing may strain smaller practices
  • Initial setup and training require time investment
  • Limited third-party integrations compared to general EHRs

Best For

Gastroenterology practices of any size prioritizing procedure-specific workflows and regulatory compliance.

Pricing

Custom quotes; typically $500-$800 per provider/month including EHR, PM, and RCM.

Visit gGastromodmed.com
2
Provation MD logo

Provation MD

specialized

Leading endoscopy documentation and reporting software that integrates seamlessly with EHRs for gastroenterology procedures.

Overall Rating9.2/10
Features
9.6/10
Ease of Use
8.7/10
Value
8.4/10
Standout Feature

Intelligent, evidence-based templates enabling single-click documentation and auto-population from EHR data

Provation MD is a specialized EHR software from Wolters Kluwer tailored for gastroenterology, focusing on streamlined procedural documentation for endoscopy procedures like EGDs, colonoscopies, and ERCPs. It features evidence-based templates, voice recognition, and auto-population of patient data to generate compliant, high-quality reports quickly. The platform integrates seamlessly with major EHR systems such as Epic and Cerner, reducing documentation time by up to 50% and enhancing workflow efficiency in busy GI practices.

Pros

  • Ultra-fast structured reporting with customizable, evidence-based templates
  • Seamless integration with Epic, Cerner, and other EHRs
  • Robust image and video capture with automatic polyp detection support

Cons

  • Steep learning curve for full customization
  • High subscription costs unsuitable for small practices
  • Primarily procedure-focused, lacking broad practice management tools

Best For

Mid-to-large gastroenterology practices with high endoscopy volumes needing rapid, compliant procedure documentation.

Pricing

Quote-based subscription; typically $1,500–$3,500 per month per provider, scaled by procedure volume and integrations.

Visit Provation MDprovationmedical.com
3
Casetabs logo

Casetabs

specialized

Cloud-native platform for gastroenterology procedure documentation, coding, and quality reporting with EHR integration.

Overall Rating6.2/10
Features
5.8/10
Ease of Use
7.5/10
Value
6.0/10
Standout Feature

Decentralized trial management with eConsent and remote patient monitoring

Casetabs is a patient-centric platform primarily designed for decentralized clinical trials, offering tools for recruitment, eConsent, data collection, and remote monitoring. While not a dedicated EHR, it can support gastroenterology practices engaged in clinical research by managing trial-specific patient data and outcomes like GI procedure tracking in trial contexts. However, it lacks comprehensive EHR features such as full patient charting, billing integration, or specialized gastroenterology templates for routine clinical care.

Pros

  • Strong patient engagement and recruitment tools ideal for gastro clinical trials
  • Decentralized capabilities reduce site visit needs for research patients
  • Modern, intuitive interface for data entry and monitoring

Cons

  • Not a true EHR; lacks standard clinical documentation, scheduling, and billing
  • Limited customization for gastroenterology-specific workflows like endoscopy reporting
  • Primarily trial-focused, unsuitable for everyday practice management

Best For

Gastroenterology practices heavily involved in clinical trials needing patient recruitment and remote data collection tools.

Pricing

Custom enterprise pricing based on trial scale and users; typically starts around $5,000/month for mid-sized implementations.

Visit Casetabscasetabs.com
4
EndoSoft logo

EndoSoft

specialized

Comprehensive endoscopy information management system designed for gastroenterologists with HIS/EHR interoperability.

Overall Rating8.4/10
Features
9.2/10
Ease of Use
7.8/10
Value
8.0/10
Standout Feature

Structured, voice-enabled reporting templates that automate pathology integration and generate fully compliant procedure notes.

EndoSoft is a specialized EHR software tailored for gastroenterology practices, providing comprehensive endoscopy workflow management from procedure documentation to image and video archiving. It supports structured reporting, voice recognition, and integration with hospital information systems (HIS) and PACS for seamless data exchange. The platform ensures HIPAA compliance and regulatory adherence, making it suitable for high-volume GI procedures like colonoscopies and EGDs.

Pros

  • Highly specialized endoscopy reporting with customizable templates
  • Excellent multimedia capture and management for images/videos
  • Strong integration capabilities with HIS, PACS, and lab systems

Cons

  • Dated user interface requiring adaptation
  • Lengthy implementation and training process
  • Pricing lacks transparency and can be premium for smaller practices

Best For

Medium to large gastroenterology clinics handling high-volume endoscopic procedures that need robust, procedure-specific documentation.

Pricing

Custom modular pricing upon request; typically starts at $500/user/month for core features, with add-ons for advanced integrations.

Visit EndoSoftendosoft.com
5
Epic Systems logo

Epic Systems

enterprise

Enterprise EHR platform featuring robust gastroenterology workflows, endoscopy modules, and advanced analytics.

Overall Rating8.7/10
Features
9.3/10
Ease of Use
7.2/10
Value
7.9/10
Standout Feature

Specialized Endoscopy System with multimedia procedure capture and automated quality reporting

Epic Systems offers a robust, enterprise-grade electronic health record (EHR) platform with specialized modules for gastroenterology, enabling comprehensive management of patient encounters, procedures, and outcomes. It includes tailored templates for endoscopy reports, colonoscopy documentation, pathology integration, and GI-specific order sets to streamline workflows in high-volume practices. The system excels in interoperability, allowing seamless data exchange with labs, imaging systems, and other EHRs via FHIR standards.

Pros

  • Highly customizable GI procedure templates and flowsheets
  • Superior interoperability and data analytics for population health
  • Scalable for large hospitals with robust security and compliance

Cons

  • Steep learning curve and complex interface
  • Prolonged and costly implementation process
  • High ongoing costs may overwhelm smaller practices

Best For

Large gastroenterology departments or hospital systems needing enterprise-scale EHR with deep integrations.

Pricing

Custom enterprise pricing; implementation often exceeds $1M with per-provider subscription fees of $500-$1,500/month plus hosting.

6
Oracle Health logo

Oracle Health

enterprise

Enterprise EHR solution with specialized gastroenterology tools for procedural documentation and patient management.

Overall Rating8.1/10
Features
9.2/10
Ease of Use
6.8/10
Value
7.4/10
Standout Feature

AI-powered clinical decision support with procedural intelligence tailored for gastroenterology workflows

Oracle Health is a comprehensive enterprise EHR platform that supports gastroenterology practices with specialized workflows for endoscopy procedures, GI clinic management, and procedural documentation. It integrates advanced imaging, scheduling, and analytics to streamline patient care from diagnosis to follow-up in gastrointestinal specialties. Leveraging Oracle's cloud infrastructure, it enables scalable data management and AI-driven insights for large health systems handling complex GI cases.

Pros

  • Robust endoscopy and procedure documentation with integrated imaging support
  • Advanced AI analytics and population health management for GI outcomes
  • Seamless scalability and interoperability for large hospital networks

Cons

  • Steep learning curve and complex customization process
  • High implementation costs and long deployment timelines
  • Less intuitive interface compared to gastro-specific niche EHRs

Best For

Large gastroenterology departments or hospital systems requiring enterprise-grade integration and analytics.

Pricing

Custom enterprise pricing; typically $400-800 per provider/month plus substantial one-time implementation fees starting at $500K+.

Visit Oracle Healthoracle.com/health
7
NextGen Healthcare logo

NextGen Healthcare

enterprise

Ambulatory EHR with customizable gastroenterology templates and integrated endoscopy reporting capabilities.

Overall Rating8.3/10
Features
9.1/10
Ease of Use
7.4/10
Value
7.9/10
Standout Feature

End-to-End Endoscopy Workflow with integrated image capture, annotation, and automated reporting

NextGen Healthcare offers a comprehensive EHR platform with specialized modules for gastroenterology, including tools for endoscopy workflows, procedure documentation, and image management. It supports GI-specific templates for colonoscopies, EGDs, and other procedures, along with integration for pathology results and patient registries. The system emphasizes interoperability, population health analytics, and compliance with ONC standards, making it suitable for mid-to-large practices.

Pros

  • Robust GI-specific features like endoscopy reporting and ImageVault for procedure images
  • Strong interoperability and analytics for population health management
  • Scalable for enterprise-level practices with reliable uptime

Cons

  • Steep learning curve and complex interface for new users
  • High implementation costs and ongoing fees
  • Occasional customization delays and performance lags during peak use

Best For

Mid-to-large gastroenterology practices seeking enterprise-grade EHR with advanced specialty workflows.

Pricing

Enterprise subscription pricing starts at ~$400/provider/month plus implementation fees ($50K+); custom quotes required.

8
athenahealth logo

athenahealth

enterprise

Cloud-based EHR offering gastroenterology-specific content, billing, and population health management.

Overall Rating8.4/10
Features
8.7/10
Ease of Use
8.2/10
Value
7.8/10
Standout Feature

The athenahealth network for real-time payer connectivity and automated prior authorizations, reducing GI procedure delays.

athenahealth is a cloud-based EHR and practice management platform tailored for specialties like Gastroenterology, offering tools for procedure documentation, endoscopy reporting, patient scheduling, and billing. It streamlines workflows with specialty-specific templates, e-prescribing, and interoperability via its athenahealth network. The software supports population health management and revenue cycle optimization, making it suitable for GI practices handling complex procedures and chronic conditions.

Pros

  • Strong interoperability and data exchange through the athenahealth network
  • Comprehensive revenue cycle management with high claim acceptance rates
  • Specialty-specific templates for GI procedures like colonoscopies and endoscopies

Cons

  • Higher pricing that may strain smaller practices
  • Limited customization options for highly niche GI workflows
  • Occasional customer support delays during peak times

Best For

Mid-sized gastroenterology practices needing robust billing, scheduling, and cloud accessibility without heavy IT overhead.

Pricing

Subscription-based at $300-$450 per provider/month, plus one-time implementation fees of $5,000+ and add-ons for advanced features.

Visit athenahealthathenahealth.com
9
eClinicalWorks logo

eClinicalWorks

enterprise

EHR system with dedicated gastroenterology module for endoscopy scheduling and procedure documentation.

Overall Rating7.8/10
Features
8.3/10
Ease of Use
6.9/10
Value
7.6/10
Standout Feature

Customizable Procedure Note Builder with GI-specific macros and templates for rapid endoscopy reporting

eClinicalWorks is a comprehensive EHR platform widely used in gastroenterology practices, offering specialty-specific templates for procedures like endoscopies, colonoscopies, and GI consultations. It integrates patient management, scheduling, billing, telehealth, and population health tools to streamline workflows. The system supports interoperability with labs, imaging, and devices, aiding in efficient documentation and compliance with GI-focused quality measures.

Pros

  • Specialty-specific GI templates for endoscopy and procedure documentation
  • Strong interoperability with scopes, labs, and billing systems
  • Scalable cloud-based platform with telehealth integration

Cons

  • Dated interface with steep learning curve for new users
  • Lengthy implementation and customization process
  • Inconsistent customer support response times

Best For

Medium to large gastroenterology practices needing an all-in-one EHR with robust billing and compliance tools.

Pricing

Quote-based pricing, typically $449-$999 per provider per month depending on practice size and features.

Visit eClinicalWorkseclinicalworks.com
10
Veradigm logo

Veradigm

enterprise

EHR and practice management platform supporting specialty workflows for gastroenterology practices.

Overall Rating7.5/10
Features
7.8/10
Ease of Use
7.0/10
Value
7.2/10
Standout Feature

GI-specific endoscopy workflow module with procedure documentation and quality reporting tools

Veradigm offers a comprehensive EHR platform with specialty-specific modules, including support for gastroenterology practices through customizable templates for procedures like colonoscopies and endoscopies. It integrates patient records, scheduling, billing, and population health analytics to streamline GI workflows. The system emphasizes interoperability and data-driven insights for improved care coordination in digestive health specialties.

Pros

  • Specialty-specific templates for GI procedures and endoscopy reporting
  • Strong interoperability with labs, imaging, and payer systems
  • Advanced analytics for population health in gastroenterology

Cons

  • Steep learning curve for new users
  • Custom pricing can be expensive for smaller practices
  • Occasional interface glitches reported in high-volume use

Best For

Mid-sized gastroenterology practices seeking integrated EHR with robust analytics and interoperability.

Pricing

Custom subscription pricing based on practice size; typically $500-$900 per provider per month including implementation fees.

Visit Veradigmveradigm.com

Conclusion

The top-ranked gastroenterology EHR software showcases diverse strengths, with gGastro leading as the overall choice—offering specialty-specific cloud-based tools and AI-powered clinical decision support. Provation MD follows closely, excelling in endoscopy documentation integration, while Casetabs stands out for its robust procedural coding and quality reporting capabilities. Each solution addresses unique practice needs, making the landscape rich with innovation.

gGastro logo
Our Top Pick
gGastro

Explore gGastro to unlock tailored workflows and prioritize patient care—its specialty focus and advanced features set it apart as the ideal tool for modern gastroenterology practices.