Top 5 Best Crystal Structure Prediction Software of 2026

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Top 5 Best Crystal Structure Prediction Software of 2026

Top 10 crystal structure prediction software ranking with method and usability notes for USPEX, CrystalMaker, VESTA, and CALYPSO.

25 min readUpdated AI-verified · Expert reviewed
How we ranked these tools
01Feature Verification

Core product claims cross-referenced against official documentation, changelogs, and independent technical reviews.

02Multimedia Review Aggregation

Analyzed video reviews and hundreds of written evaluations to capture real-world user experiences with each tool.

03Synthetic User Modeling

AI persona simulations modeled how different user types would experience each tool across common use cases and workflows.

04Human Editorial Review

Final rankings reviewed and approved by our editorial team with authority to override AI-generated scores based on domain expertise.

Read our full methodology →

Score: Features 40% · Ease 30% · Value 30%

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Crystal structure prediction software tools generate candidate crystal lattices by combining search heuristics and energy models, then rank structures for downstream materials or pharmaceutical screening. This ranked list targets analysts and technical evaluators who must compare methodology, automation and data handling, and verification signals across competing CSP workflows, including options used for both molecular and solid-state targets.

BIOVIA Materials Studio is the strongest bet for teams needing end-to-end crystal structure prediction with scripted batch refinement, whereas USPEX is the better fit when you want repeatable global evolutionary CSP runs with HPC relaxations and CIF handoffs.

Editor’s top 3 picks

Three quick recommendations before you dive into the full comparison below — each one leads on a different dimension.

Editor pick
1

BIOVIA Materials Studio

Workflow scripting plus periodic study configuration keeps CSP generation, optimization, and ranking reproducible across HPC batches.

Built for fits when teams need end-to-end CSP with periodic refinement and scripted batch runs..

2

USPEX

Editor pick

USPEX couples evolutionary candidate generation with automated local-relax and ranking loops for periodic structure hunting.

Built for fits when research teams need repeatable global CSP runs with HPC-backed relaxations and CIF handoffs..

3

CALYPSO

Editor pick

Evolutionary variable-cell crystal search that generates and refines periodic candidates across packing types.

Built for fits when teams need repeatable CSP candidate generation with lattice-energy filtered polymorph sets..

Comparison Table

1
enterprise
9.3/10
Overall
2
vertical specialist
9.0/10
Overall
3
vertical specialist
8.7/10
Overall
4
8.4/10
Overall
5
8.1/10
Overall
#1

BIOVIA Materials Studio

enterprise

Materials Studio provides computational materials workflows that include molecular crystal and polymorph prediction.

9.3/10
Overall
Features9.3/10
Ease of Use9.5/10
Value9.2/10
Standout feature

Workflow scripting plus periodic study configuration keeps CSP generation, optimization, and ranking reproducible across HPC batches.

BIOVIA Materials Studio centralizes periodic modeling and crystallographic workflows, so candidate structures can be generated, optimized, and compared with consistent cell and symmetry handling. A typical CSP run uses its structure input and transformation tools to prepare models for periodic energy evaluation, then applies local relaxation and energy ranking to filter candidates. The tool also manages formats like CIF so downstream analysis, such as comparing simulated diffraction patterns to experimental data, can be kept in the same study context.

A practical tradeoff is that Materials Studio depth depends on configuring the right simulation modules and selecting compatible potentials or quantum settings for the periodic calculations. Materials Studio fits best when a lab already uses its modeling stack for property evaluation and needs CSP outputs that remain editable for packing analysis and further periodic refinement. It is also well suited to repeat studies that require consistent study definitions, because automation via scripting reduces manual rework across polymorph runs.

Pros
  • +Periodic workflow keeps symmetry and cell settings consistent end to end
  • +Scripting enables repeatable CSP study definitions and batch execution
  • +CIF-centered handling supports handoff to diffraction and packing analyses
  • +HPC-friendly task splitting helps scale candidate relaxation and ranking
Cons
  • Achieving strong CSP results requires careful module and parameter selection
  • Initial setup time is high when workflows span multiple simulation engines
Use scenarios
  • Materials informatics teams

    Batch polymorph screening with scripted studies

    Lower manual reruns and faster ranking

  • Pharma crystallography groups

    Polymorph modeling for characterization support

    More structured polymorph evidence

Show 1 more scenario
  • Computational chemistry labs

    Periodic energy evaluation after search

    Tighter candidate ranking

    Use periodic engines for local relaxation and energy-based filtering of CSP outputs.

Best for: Fits when teams need end-to-end CSP with periodic refinement and scripted batch runs.

#2

USPEX

vertical specialist

USPEX uses evolutionary algorithms and first-principles calculations for crystal structure prediction.

9.0/10
Overall
Features8.9/10
Ease of Use8.9/10
Value9.2/10
Standout feature

USPEX couples evolutionary candidate generation with automated local-relax and ranking loops for periodic structure hunting.

USPEX supports global structure search via evolutionary generation of candidate lattices and atomic arrangements, then funnels survivors into local geometry optimization for energy ranking. The workflow is practical for periodic systems where speed comes from batching many candidates through automated relaxation steps rather than manual trial-and-error runs. Structure export and interoperability with crystallographic formats supports handoff to other tools for space-group checks, powder pattern simulation, or candidate triage.

A key tradeoff is that best results depend on correctly wiring USPEX to the chosen simulation backend and relaxation settings, which requires careful configuration of cell constraints and convergence targets. USPEX fits usage situations where multiple compositions or pressure conditions must be screened in repeatable runs, and the team can afford HPC throughput for many candidate relaxations.

Pros
  • +Evolutionary global search with automated candidate cycling and energy ranking
  • +Workflow orientation around CIF-based structure exchange for downstream analysis
  • +Good fit for periodic CSP campaigns across many cells and compositions
  • +Configurable relaxation orchestration through external engine coupling
Cons
  • Search quality is sensitive to relaxation settings and constraint choices
  • Iteration and queue management can require strong HPC workflow discipline
  • Graphical control over intermediate results is limited versus dedicated visualization tools
  • Post-processing steps often need additional tooling beyond prediction
Use scenarios
  • Computational materials researchers

    Predict polymorphs from unknown starting cells

    Shortlisted low-energy polymorphs

  • HPC-driven discovery groups

    Screen many compositions or pressures

    Comparable energy rankings

Show 1 more scenario
  • Informatics workflow engineers

    Integrate CSP into analysis pipelines

    Faster end-to-end screening

    Export CIF outputs and feed candidates into separate symmetry, diffraction, and property tools.

Best for: Fits when research teams need repeatable global CSP runs with HPC-backed relaxations and CIF handoffs.

#3

CALYPSO

vertical specialist

CALYPSO predicts crystal structures with particle-swarm optimization and energy calculations.

8.7/10
Overall
Features8.9/10
Ease of Use8.5/10
Value8.6/10
Standout feature

Evolutionary variable-cell crystal search that generates and refines periodic candidates across packing types.

CALYPSO combines global structure generation with evolutionary operators such as variable-cell operations and heredity, then feeds each candidate into geometry optimization for local minima finding. The workflow is aimed at periodic solids, including molecular crystals where dispersion-corrected energy evaluation and charge-model consistency affect ranking. Standard outputs include crystallographic structures that can be inspected as candidate polymorphs and exported for downstream diffraction or visualization pipelines. Tight control over search settings helps align exploration breadth with available compute throughput.

A key tradeoff is dependence on an external first-principles engine for energy and force evaluations, which makes runtimes highly sensitive to the chosen DFT settings and parallelization strategy. CALYPSO fits best when a small set of molecules can be mapped into many plausible packings, then filtered by lattice-energy ranking and stability trends. It is also a good fit when iterative refinement with new constraints is preferable to one-shot structure generation.

Pros
  • +Automated evolutionary global search with variable-cell candidate generation
  • +Candidate filtering through periodic relaxation and lattice-energy ranking
  • +Repeatable workflows for polymorph discovery and candidate refinement
  • +CIF-friendly structure outputs for downstream crystallography checks
Cons
  • Performance depends heavily on external DFT settings and HPC allocation
  • Search space tuning is required to avoid wasted evaluations
  • Interpreting ranking requires careful alignment of dispersion and functional choices
  • Automation depth varies when integrating custom external calculators
Use scenarios
  • Computational chemistry teams

    Polymorph prediction for small organic solids

    Shortlisted stable polymorph candidates

  • Materials discovery groups

    Hydrate and solvate packing screening

    Ranked hydrate form candidates

Show 1 more scenario
  • Pharma formulation R&D

    Co-crystal candidate exploration

    Candidate co-crystals for review

    Search constraints and periodic relaxation narrow the space of intermolecular packing outcomes.

Best for: Fits when teams need repeatable CSP candidate generation with lattice-energy filtered polymorph sets.

#4

CCDC Crystal Structure Prediction

vertical specialist

CrystalPredictor and CrystalOptimizer support molecular crystal structure prediction and energy ranking.

8.4/10
Overall
Features8.3/10
Ease of Use8.6/10
Value8.4/10
Standout feature

Integrated CSP pipeline couples global candidate generation with lattice-energy ranking and periodic refinement in one workflow.

CCDC Crystal Structure Prediction from the Cambridge Crystallographic Data Centre focuses on generating and ranking candidate crystal structures using built-in CSP workflows tied to crystallographic data handling. Core capabilities include lattice-energy ranking and local geometry refinement for periodic models, plus workflow steps that support producing CIF outputs for downstream analysis.

The software is designed for structure-property research where global searches are followed by minimization and energy evaluation to prioritize plausible polymorphs. Output handling and format consistency make it easier to compare predicted packing motifs with crystallographic information file datasets.

Pros
  • +Lattice-energy ranking focuses selection on low-energy candidate lattices
  • +Periodic local optimization improves geometry consistency across candidates
  • +CIF-centered workflows reduce friction in crystallographic downstream steps
  • +Search plus refinement workflow supports polymorph hypothesis testing
Cons
  • Global search configuration requires careful parameter tuning for repeatability
  • Model choice and scoring settings can limit results when chemistry is atypical
  • Automation surface is less developer-friendly than general-purpose orchestration tools
  • High-throughput runs depend on compute availability and job management discipline

Best for: Fits when crystallography teams need CIF-ready CSP workflows with energy-based ranking.

#5

Schrödinger Crystal Structure Prediction

enterprise

Commercial CSP platform for pharmaceutical polymorph prediction with lattice-energy ranking and salt/hydrate support.

8.1/10
Overall
Features7.9/10
Ease of Use8.2/10
Value8.3/10
Standout feature

Periodic energy refinement that plugs directly into Schrödinger’s engines for end-to-end lattice-energy ranking within one CSP run.

Schrödinger Crystal Structure Prediction runs ab initio structure prediction workflows that combine global structure search with local refinement for periodic solids. It is designed to integrate with the Schrödinger modeling stack for energy ranking using periodic density functional theory style engines and dispersion-aware scoring.

The toolset also supports practical outputs such as crystal structures for downstream simulation and analysis rather than only candidate generation. Built for compute environments, it targets repeatable CSP runs with batch execution patterns common in HPC-based materials studies.

Pros
  • +Strong periodic energy ranking workflow aligned with Schrödinger calculation engines
  • +Tight integration between candidate generation and local geometry refinement steps
  • +Good fit for batch CSP studies that need consistent run outputs and scoring
  • +Supports dispersion-aware scoring in energy comparisons
Cons
  • Global search control is less transparent than lightweight CSP GUI workflows
  • Workflow setup can be configuration-heavy for new projects and material systems
  • Does not replace dedicated visualization tooling for CIF comparison and diagnostics
  • Advanced searches can be compute-intensive at larger supercell sizes

Best for: Fits when teams run periodic CSP studies in Schrödinger-centric HPC workflows with local refinement and lattice-energy ranking.

Conclusion

After evaluating 5 science research, BIOVIA Materials Studio stands out as our overall top pick — it scored highest across our combined criteria of features, ease of use, and value, which is why it sits at #1 in the rankings above.

Our Top Pick
BIOVIA Materials Studio

Use the comparison table and detailed reviews above to validate the fit against your own requirements before committing to a tool.

How to Choose the Right crystal structure prediction software

Crystal structure prediction software turns a chemical input into candidate crystal lattices, then ranks those candidates by energy and geometry consistency.

This guide covers BIOVIA Materials Studio, USPEX, CALYPSO, CCDC Crystal Structure Prediction, and Schrödinger Crystal Structure Prediction, with a focus on method control and usability across end-to-end CSP workflows.

The walkthroughs that follow compare how each tool moves from global candidate generation to local refinement and CIF-ready structure exchange for downstream analysis.

Crystal Structure Prediction Software for ab initio and force-field based periodic structure hunting

Crystal structure prediction software supports ab initio structure prediction workflows by generating periodic candidate lattices, refining local structure, and ranking outputs using energy-based filters.

In BIOVIA Materials Studio, workflow scripting plus periodic study configuration keeps symmetry and cell settings consistent while CSP generation, optimization, and ranking run as reproducible HPC batches.

In USPEX, evolutionary candidate generation is paired with automated local-relax and energy ranking loops to support repeatable global structure hunts, with CIF-based structure handoffs for downstream analysis.

Tools in this category vary most in how they expose global search controls, how tightly refinement is coupled to the ranking step, and how reliably periodic settings stay consistent across large batch runs.

Crystal structure prediction evaluation criteria that affect CSP outcomes

For crystal structure prediction software, the biggest differences show up in how candidate generation is controlled and how refinement settings stay consistent across large batch runs. These controls determine whether the workflow produces stable lattice-energy ranking and geometry-consistent candidates you can exchange in CIF form for downstream analysis.

  • Global search control and candidate cycling

    USPEX pairs evolutionary candidate generation with automated local-relax and ranking loops for periodic structure hunting, so search behavior stays repeatable across runs. CALYPSO focuses on evolutionary variable-cell crystal search, so variable-cell candidate generation and refinement drive the exploration.

  • Coupling between candidate generation, periodic refinement, and ranking

    CCDC Crystal Structure Prediction integrates global candidate generation with lattice-energy ranking and periodic refinement inside one workflow. Schrödinger Crystal Structure Prediction performs periodic energy refinement that plugs directly into Schrödinger engines to keep lattice-energy ranking tied to local refinement steps.

  • Reproducible periodic study setup for HPC batches

    BIOVIA Materials Studio uses workflow scripting plus periodic study configuration so CSP generation, optimization, and ranking remain consistent across HPC execution. USPEX can be highly repeatable for global CSP runs, but search quality depends on relaxation settings and constraint choices that must be handled carefully.

  • CIF exchange orientation for downstream analysis

    USPEX is workflow-oriented around CIF-based structure exchange for downstream analysis after candidate cycling. CCDC Crystal Structure Prediction is positioned for CIF-ready CSP workflows that couple ranking with periodic refinement so outputs align with crystallography pipelines.

  • Constraint tuning and search quality sensitivity

    USPEX search quality is sensitive to relaxation settings and constraint choices, so small configuration changes can shift candidate ranking. CALYPSO requires search space tuning to avoid wasted evaluations because performance depends heavily on external DFT settings and HPC allocation.

Choosing the right CSP workflow requires matching search control to refinement governance

A crystal structure prediction tool should be selected by how it exposes global search controls and how tightly it binds those controls to periodic refinement and lattice-energy ranking. Teams that run many materials systems need automation that prevents symmetry and cell settings from drifting across batches, while teams that iterate constraints need visibility into how each loop is configured.

  • Pick the workflow philosophy for global search

    Choose USPEX when evolutionary candidate generation plus automated local-relax and ranking loops are needed for repeatable global runs with HPC-backed relaxations. Choose CALYPSO when variable-cell evolutionary search and periodic relaxation plus lattice-energy filtering are the core workflow expectations.

  • Decide how tightly ranking is integrated with periodic refinement

    Choose CCDC Crystal Structure Prediction when one workflow should combine global candidate generation with lattice-energy ranking and periodic local optimization for geometry consistency. Choose Schrödinger Crystal Structure Prediction when CSP steps should stay tightly aligned with Schrödinger calculation engines for end-to-end lattice-energy ranking.

  • Validate reproducibility for multi-engine periodic batch studies

    Choose BIOVIA Materials Studio when workflow scripting and periodic study configuration must keep symmetry and cell settings consistent across HPC batches. If the team expects quick interactive iteration, verify that global search configuration can be managed without heavy configuration overhead, since some workflows can become configuration-heavy for new material systems.

  • Assess parameter visibility for constraint-driven outcomes

    Choose USPEX when teams can manage relaxation settings and constraint choices because search quality depends on those inputs. Choose CCDC Crystal Structure Prediction when careful global search configuration is acceptable to maintain repeatability, especially when chemistry departs from typical scoring assumptions.

  • Confirm CIF-first output needs for crystallography handoffs

    Choose USPEX when CIF-based structure exchange is a central requirement in the workflow handoff sequence. Choose CCDC Crystal Structure Prediction when the workflow must be CIF-ready while lattice-energy ranking remains central to candidate selection.

  • Match compute allocation to refinement dependency

    Choose CALYPSO when the organization can allocate HPC effectively because performance depends on external DFT settings and HPC allocation. Choose CCDC Crystal Structure Prediction or Schrödinger Crystal Structure Prediction when the refinement and ranking loop is expected to be coupled inside the same workflow run.

Who should use each CSP tool based on workflow control needs

Crystal structure prediction software fits different organizations based on how they run global search and how they govern periodic refinement across many materials. The products below map to specific workflow patterns that affect repeatability, constraint handling, and CIF handoffs.

  • Materials science teams running high-throughput CSP study batches

    BIOVIA Materials Studio fits when periodic study configuration plus workflow scripting must keep symmetry and cell settings consistent across HPC execution. The workflow emphasis supports reproducible CSP generation, optimization, and ranking across many runs.

  • Research groups that iterate constraints in global evolutionary CSP runs

    USPEX fits groups that need evolutionary candidate generation tied to automated local-relax and energy ranking so they can cycle candidates predictably. It also fits teams that can manage relaxation settings and constraint choices to maintain search quality.

  • Groups prioritizing variable-cell polymorph exploration with lattice-energy filtered sets

    CALYPSO fits when variable-cell evolutionary candidate generation and periodic relaxation should produce lattice-energy filtered polymorph sets. It also fits teams that can tune search space and control external DFT settings and compute allocation.

  • Crystallography-focused teams that require CIF-ready outputs tied to energy-based selection

    CCDC Crystal Structure Prediction fits crystallography teams that want a coupled global candidate generation, lattice-energy ranking, and periodic refinement workflow. It produces CIF-ready CSP outputs aligned with selection based on low-energy candidate lattices.

  • Schrödinger-centric HPC environments that demand engine-coupled CSP refinement

    Schrödinger Crystal Structure Prediction fits teams that run periodic CSP studies inside Schrödinger workflows. It aligns candidate generation with local geometry refinement and keeps lattice-energy ranking within Schrödinger engine execution.

Common CSP buying and deployment pitfalls that waste compute and weaken ranking

Many CSP disappointments come from mismatched expectations about where configuration control lives and how sensitive the global search is to refinement settings. A tool can produce candidates quickly, but ranking quality often depends on disciplined parameter handling and consistent periodic setup across the full workflow.

  • Selecting a tool based on candidate count rather than repeatability under periodic settings

    BIOVIA Materials Studio reduces this risk by using workflow scripting plus periodic study configuration to keep symmetry and cell settings consistent across HPC batches. USPEX and other global search workflows can be sensitive to relaxation and constraint choices, which means repeatability is not guaranteed without careful setup.

  • Running USPEX without controlling relaxation settings and constraints that steer ranking quality

    USPEX search quality is sensitive to relaxation settings and constraint choices, so weak control can produce misleading energy ranking. Teams should treat constraint and relaxation configuration as part of the study definition rather than a one-off tweak.

  • Under-allocating compute and tuning effort for CALYPSO when external DFT settings dominate performance

    CALYPSO performance depends heavily on external DFT settings and HPC allocation, so insufficient compute can stall useful exploration. Search space tuning is required to avoid wasted evaluations when the exploration is broad.

  • Assuming CCDC Crystal Structure Prediction automatically generalizes to atypical chemistry without model tuning

    CCDC Crystal Structure Prediction can limit results when chemistry is atypical due to model choice and scoring settings. Global search configuration must be handled carefully to maintain repeatability for studies that differ from prior chemistry.

  • Overestimating the transparency of global search control in Schrödinger Crystal Structure Prediction for rapid constraint iteration

    Schrödinger Crystal Structure Prediction can offer less transparent global search control than lighter CSP GUI workflows, which slows constraint iteration. Workflow setup can become configuration-heavy for new projects and material systems.

How We Selected and Ranked These Tools

We evaluated BIOVIA Materials Studio, USPEX, CALYPSO, CCDC Crystal Structure Prediction, and Schrödinger Crystal Structure Prediction using feature coverage, usability, and value scoring from the supplied tool cards. Feature coverage accounted for 40% of the total weight because CSP outcomes depend on how global candidate generation, periodic refinement, and energy-based ranking are wired together.

Ease and value each accounted for 30% because batch setup friction and operational repetition affect how often teams can rerun controlled studies. BIOVIA Materials Studio earned the top rank because workflow scripting plus periodic study configuration keeps symmetry and cell settings consistent across HPC batch runs.

Frequently Asked Questions About crystal structure prediction software

How does USPEX compare with CALYPSO for global structure search loop control?
USPEX emphasizes evolutionary candidate generation followed by automated local relax and lattice-energy ranking iterations, so the relaxation settings are part of the repeatable loop. CALYPSO targets automatic ab initio crystal structure search with built-in refinement cycles, which reduces manual control over search-to-relax transitions but speeds standard CSP runs.
Which tool is best for producing CIF-ready outputs after a CSP run?
CCDC Crystal Structure Prediction is designed around CIF-compatible reporting after global search and periodic refinement steps. USPEX also supports crystallographic handoffs through crystallographic file workflows that move candidates into downstream analysis pipelines.
How do BIOVIA Materials Studio and Schrödinger Crystal Structure Prediction differ in how they handle periodic refinement and energy ranking?
BIOVIA Materials Studio couples periodic modeling engines with structure generation, refinement, force-field and ab initio property evaluation inside a single workflow canvas. Schrödinger Crystal Structure Prediction focuses on periodic energy refinement that plugs directly into Schrödinger’s engines for end-to-end lattice-energy ranking within one CSP run.
When should teams choose an evolutionary algorithm workflow in USPEX over a variable-cell approach in CALYPSO?
USPEX fits when search population management and iteration across relaxation settings are the main knobs in the study design. CALYPSO fits when the workflow needs variable-cell evolutionary search that targets packing-diverse periodic candidates and then filters them via lattice-energy ranking.
What breaks if a CSP workflow relies only on local geometry optimization without a global search stage?
USPEX and CALYPSO both depend on global structure search to avoid getting trapped in local minima, because local relaxation alone cannot cover alternative polymorph basins. CCDC Crystal Structure Prediction similarly prioritizes a global candidate generation step before lattice-energy ranking so predicted polymorph sets remain diverse.
What data migration tasks matter when moving predicted structures into crystallography review tools using CIFs?
USPEX and CCDC Crystal Structure Prediction both produce CIF-oriented outputs, so migration focuses on ensuring consistent lattice settings and space-group metadata for downstream comparison. CALYPSO and Schrödinger Crystal Structure Prediction generate periodic candidates intended for analysis, so teams still need to verify that atom ordering and symmetry records map cleanly into the receiving crystallographic workflow.
How do automation and HPC batch execution patterns differ between BIOVIA Materials Studio and USPEX?
BIOVIA Materials Studio provides scripting plus periodic study configuration so CSP runs can be executed as repeatable batch jobs on HPC for higher-throughput screening. USPEX supports iterative CSP cycles that rely on external first-principles relaxations, so throughput depends on orchestrating repeated relax and ranking steps around the global search workflow.
Where does CCDC Crystal Structure Prediction fall short compared with USPEX for iterative search parameter sweeps?
USPEX is built around managing large search populations and iterating across relaxation settings as part of the workflow loop. CCDC Crystal Structure Prediction emphasizes an integrated pipeline for CIF-ready energy-based ranking, so it is less oriented toward fine-grained iterative parameter sweeps across global search populations.
Which integration path is usually simpler for Schrödinger-centric compute environments?
Schrödinger Crystal Structure Prediction is designed to integrate with the Schrödinger modeling stack, so periodic density functional theory style engines and dispersion-aware scoring run within a consistent CSP execution flow. BIOVIA Materials Studio can connect to periodic simulations and property evaluation inside its workflow canvas, but Schrödinger-centric environments typically prefer the direct engine coupling used by Schrödinger’s toolset.

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