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Top 10 Best Biorepository Software of 2026

Discover the top 10 biorepository software to streamline sample management. Compare features, find the best fit, and optimize operations today.

Min-ji Park

Min-ji Park

Feb 11, 2026

10 tools comparedExpert reviewed
Independent evaluation · Unbiased commentary · Updated regularly
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Biorepository software is critical for maintaining accuracy, compliance, and efficiency in managing biospecimens and compound libraries, with a range of tools to suit different research needs. Below, we’ve curated the top 10 solutions, from cloud-based platforms to open-source systems, designed to streamline workflows and support scalable research operations.

Quick Overview

  1. 1#1: FreezerPro - Cloud-based sample tracking and inventory management system designed specifically for biorepositories and biobanks.
  2. 2#2: Mosaic - Comprehensive sample management platform for handling compound libraries, biospecimens, and workflow automation in research biorepositories.
  3. 3#3: OpenSpecimen - Open-source biospecimen management software for tracking samples, participants, and ensuring regulatory compliance in research settings.
  4. 4#4: Freezerworks - Flexible sample inventory software for managing freezer storage, aliquots, and derivatives in biorepositories.
  5. 5#5: LabVantage - Enterprise LIMS with a dedicated biobanking module for end-to-end sample lifecycle management and data integration.
  6. 6#6: STARLIMS - Laboratory information management system featuring biorepository tools for sample accessioning, storage, and quality control.
  7. 7#7: SampleManager LIMS - Robust LIMS platform supporting biorepository operations including sample tracking, chain of custody, and compliance reporting.
  8. 8#8: LabKey Server - Biomedical data management platform with biorepository features for sample tracking, assay data, and study integration.
  9. 9#9: CloudLIMS - Cloud-based LIMS for biorepositories offering sample management, workflow automation, and regulatory compliance tools.
  10. 10#10: Matrix Gemini LIMS - Configurable LIMS solution with modules for biobanking, sample storage, and inventory control in life sciences.

Tools were chosen based on their ability to deliver essential features—including sample tracking, regulatory compliance, and automation—along with user-friendliness, reliability, and overall value, ensuring they meet the demands of diverse biorepository environments.

Comparison Table

Biorepository software is critical for efficient storage and data management, and this comparison table breaks down key tools like FreezerPro, Mosaic, OpenSpecimen, Freezerworks, LabVantage, and more. Readers will gain insights into features, usability, and suitability to identify the best fit for their storage and data needs.

1FreezerPro logo9.6/10

Cloud-based sample tracking and inventory management system designed specifically for biorepositories and biobanks.

Features
9.8/10
Ease
9.2/10
Value
9.4/10
2Mosaic logo9.2/10

Comprehensive sample management platform for handling compound libraries, biospecimens, and workflow automation in research biorepositories.

Features
9.6/10
Ease
8.1/10
Value
8.7/10

Open-source biospecimen management software for tracking samples, participants, and ensuring regulatory compliance in research settings.

Features
9.2/10
Ease
7.8/10
Value
9.5/10

Flexible sample inventory software for managing freezer storage, aliquots, and derivatives in biorepositories.

Features
9.2/10
Ease
7.8/10
Value
8.0/10
5LabVantage logo8.4/10

Enterprise LIMS with a dedicated biobanking module for end-to-end sample lifecycle management and data integration.

Features
9.1/10
Ease
7.6/10
Value
8.0/10
6STARLIMS logo8.5/10

Laboratory information management system featuring biorepository tools for sample accessioning, storage, and quality control.

Features
9.2/10
Ease
7.6/10
Value
8.0/10

Robust LIMS platform supporting biorepository operations including sample tracking, chain of custody, and compliance reporting.

Features
9.1/10
Ease
7.6/10
Value
7.9/10

Biomedical data management platform with biorepository features for sample tracking, assay data, and study integration.

Features
9.2/10
Ease
6.4/10
Value
7.6/10
9CloudLIMS logo8.1/10

Cloud-based LIMS for biorepositories offering sample management, workflow automation, and regulatory compliance tools.

Features
8.5/10
Ease
7.9/10
Value
7.7/10

Configurable LIMS solution with modules for biobanking, sample storage, and inventory control in life sciences.

Features
8.5/10
Ease
7.0/10
Value
7.5/10
1
FreezerPro logo

FreezerPro

enterprise

Cloud-based sample tracking and inventory management system designed specifically for biorepositories and biobanks.

Overall Rating9.6/10
Features
9.8/10
Ease of Use
9.2/10
Value
9.4/10
Standout Feature

Interactive graphical inventory viewer with drag-and-drop sample placement and real-time 3D freezer visualization

FreezerPro by Azenta is a comprehensive biorepository management software that enables precise tracking, storage, and retrieval of biological samples across freezers, racks, and boxes. It offers advanced features like barcode/QR code scanning, full sample lineage tracking, audit trails for compliance (e.g., 21 CFR Part 11, GxP), and customizable workflows to optimize lab operations. The platform supports cloud and on-premise deployments, integrates with lab instruments, and provides powerful reporting and search capabilities for efficient sample management in research and biobanking environments.

Pros

  • Exceptional sample tracking with visual freezer mapping and 3D navigation
  • Robust compliance tools including electronic signatures and detailed audit logs
  • Scalable for high-volume biorepositories with seamless integrations

Cons

  • Steep initial setup and customization for complex workflows
  • Premium pricing may be prohibitive for small labs
  • Limited native mobile app; relies on web access

Best For

Large-scale biobanks, pharmaceutical companies, and research institutions handling thousands of samples with stringent regulatory requirements.

Pricing

Custom quote-based pricing; typically starts at $5,000+ annually for basic setups, scaling with users, storage volume, and features—contact Azenta for demo and pricing.

2
Mosaic logo

Mosaic

enterprise

Comprehensive sample management platform for handling compound libraries, biospecimens, and workflow automation in research biorepositories.

Overall Rating9.2/10
Features
9.6/10
Ease of Use
8.1/10
Value
8.7/10
Standout Feature

Intelligent Automation Engine for optimizing sample requests and cherry-picking with AI-driven algorithms

Mosaic by Titian Software is a leading biorepository management platform that provides end-to-end tracking of biological samples from receipt through storage, processing, and distribution. It excels in automating workflows, inventory management, and sample requests for high-volume biobanks, pharmaceutical R&D labs, and research institutions. With strong compliance features like 21 CFR Part 11 support and integration with robotics and LIMS systems, it optimizes sample utilization and minimizes errors.

Pros

  • Comprehensive sample lifecycle management with audit trails and compliance tools
  • Seamless integrations with lab instruments, robotics, and external systems
  • Advanced automation for cherry-picking and request fulfillment to maximize efficiency

Cons

  • Steep learning curve for initial setup and customization
  • High enterprise-level pricing not suitable for small labs
  • Limited public documentation; relies heavily on vendor support

Best For

Large-scale biobanks, pharmaceutical companies, and academic research facilities handling thousands of samples with complex workflows.

Pricing

Custom quote-based pricing; typically starts at $50,000+ annually for enterprise deployments, with perpetual licenses also available.

Visit Mosaictitian-software.com
3
OpenSpecimen logo

OpenSpecimen

specialized

Open-source biospecimen management software for tracking samples, participants, and ensuring regulatory compliance in research settings.

Overall Rating8.7/10
Features
9.2/10
Ease of Use
7.8/10
Value
9.5/10
Standout Feature

Sophisticated rules-based aliquotting engine for automated specimen processing and sub-aliquoting

OpenSpecimen is an open-source biobanking platform designed to manage the full lifecycle of biospecimens in biorepositories, from collection and processing to storage, distribution, and research utilization. It provides tools for participant registration, specimen tracking, inventory management, and advanced querying for research cohorts. The software emphasizes compliance with regulations like HIPAA and GDPR, while supporting integrations with EHRs, LIS, and other clinical systems.

Pros

  • Fully open-source and free core version, reducing costs significantly
  • Comprehensive specimen lifecycle management with advanced aliquotting and querying
  • Strong integrations with clinical systems and robust compliance features

Cons

  • Steep learning curve for setup and advanced customization
  • Requires IT expertise for self-hosting and maintenance
  • Community support may be slower than commercial alternatives

Best For

Academic biorepositories and research institutions seeking a highly customizable, cost-free solution for large-scale specimen management.

Pricing

Core open-source version is free; enterprise support and hosting available via paid subscriptions starting at custom quotes.

Visit OpenSpecimenopenspecimen.org
4
Freezerworks logo

Freezerworks

specialized

Flexible sample inventory software for managing freezer storage, aliquots, and derivatives in biorepositories.

Overall Rating8.7/10
Features
9.2/10
Ease of Use
7.8/10
Value
8.0/10
Standout Feature

Interactive graphical freezer overviews for intuitive space and sample visualization

Freezerworks is a robust Laboratory Information Management System (LIMS) tailored for biorepositories, enabling precise tracking of biological samples across freezers, aliquots, and full pedigrees. It provides visual freezer mapping, automated workflows for check-in/out, and comprehensive reporting for compliance with standards like CAP, FDA 21 CFR Part 11, and ISO. Designed for biobanks and research labs, it supports unlimited users and customizable modules to streamline sample lifecycle management from receipt to disposal.

Pros

  • Exceptional graphical freezer inventory visualization and mapping
  • Advanced sample pedigree tracking and aliquot management
  • Strong regulatory compliance tools with audit trails and electronic signatures

Cons

  • Steep learning curve for initial setup and customization
  • Primarily on-premise deployment with limited native cloud options
  • Quote-based pricing can be expensive for smaller labs

Best For

Mid-to-large biorepositories and biobanks needing detailed visual inventory control and regulatory compliance.

Pricing

Custom quote-based pricing starting around $10,000+ annually, depending on users, modules, and deployment.

Visit Freezerworksfreezerworks.com
5
LabVantage logo

LabVantage

enterprise

Enterprise LIMS with a dedicated biobanking module for end-to-end sample lifecycle management and data integration.

Overall Rating8.4/10
Features
9.1/10
Ease of Use
7.6/10
Value
8.0/10
Standout Feature

Visual Workflow Designer enabling no-code automation of complex biorepository processes like sample derivation and multi-site inventory synchronization

LabVantage is a comprehensive Laboratory Information Management System (LIMS) with specialized biorepository modules for managing biological sample collections, storage, and processing. It provides end-to-end tracking of specimens from intake, aliquoting, and storage to disposition, while ensuring compliance with regulations like 21 CFR Part 11 and ISO standards. The platform supports complex workflows, inventory management, and integrations with lab instruments and ELNs, making it suitable for research, clinical, and biobanking operations.

Pros

  • Highly configurable with no-code tools for custom workflows and biorepository-specific processes like aliquoting and chain-of-custody tracking
  • Robust compliance and audit trail features ideal for regulated environments
  • Scalable for large-scale operations with strong integration capabilities

Cons

  • Steep learning curve due to extensive customization options
  • Complex and time-consuming implementation process
  • Premium pricing may not suit smaller labs

Best For

Enterprise-level research institutions, biopharma companies, and clinical biorepositories requiring scalable, compliant sample management.

Pricing

Custom enterprise licensing; typically starts at $50,000+ annually based on users, modules, and deployment (on-premise or cloud).

Visit LabVantagelabvantage.com
6
STARLIMS logo

STARLIMS

enterprise

Laboratory information management system featuring biorepository tools for sample accessioning, storage, and quality control.

Overall Rating8.5/10
Features
9.2/10
Ease of Use
7.6/10
Value
8.0/10
Standout Feature

Advanced sample pedigree and lineage tracking that maps complex aliquot relationships and derivations across the entire sample lifecycle.

STARLIMS is a robust Laboratory Information Management System (LIMS) from Abbott Informatics, specifically adaptable for biorepository operations through its sample management modules. It handles end-to-end sample lifecycle processes, including accessioning, aliquoting, inventory tracking, storage optimization, and disposal, while ensuring compliance with regulations like 21 CFR Part 11, CAP, and ISO 20387. The platform supports workflow automation, instrument integrations, and advanced querying for biorepository-specific needs such as chain-of-custody and pedigree tracking.

Pros

  • Highly configurable without extensive coding
  • Excellent regulatory compliance and audit trail features
  • Scalable for large-volume enterprise biorepositories

Cons

  • Steep learning curve and complex initial configuration
  • High upfront implementation and customization costs
  • Requires dedicated IT support for optimal deployment

Best For

Large pharmaceutical, biotech, or academic biorepositories needing enterprise-grade, compliant sample tracking and workflow automation.

Pricing

Quote-based pricing with upfront implementation fees often exceeding $100,000, plus annual subscriptions starting at $50,000+ based on users, modules, and scale.

Visit STARLIMSstarlims.com
7
SampleManager LIMS logo

SampleManager LIMS

enterprise

Robust LIMS platform supporting biorepository operations including sample tracking, chain of custody, and compliance reporting.

Overall Rating8.4/10
Features
9.1/10
Ease of Use
7.6/10
Value
7.9/10
Standout Feature

Advanced dynamic sample hierarchy and aliquot tracking with barcode/RFID support for precise location management in complex storage environments

SampleManager LIMS from Thermo Fisher Scientific is a robust enterprise-level Laboratory Information Management System tailored for biorepositories, enabling end-to-end sample lifecycle management from intake to archiving and disposal. It excels in tracking aliquots, managing storage locations across freezers and racks, and ensuring chain-of-custody compliance with regulations like 21 CFR Part 11 and ISO standards. The platform supports advanced querying, customizable workflows, and integration with lab instruments for automated data capture.

Pros

  • Comprehensive sample tracking with aliquot management and real-time inventory visibility
  • Strong regulatory compliance tools including audit trails and electronic signatures
  • Scalable architecture with seamless integration to Thermo Fisher instruments and third-party systems

Cons

  • Steep learning curve due to extensive customization options
  • High implementation and licensing costs for enterprise deployments
  • Limited out-of-the-box reporting flexibility without configuration

Best For

Large biorepositories in pharmaceutical, biotech, and academic research settings requiring scalable, compliant sample management at high volumes.

Pricing

Quote-based enterprise pricing, typically starting at $50,000+ annually depending on modules, users, and deployment scale.

Visit SampleManager LIMSthermofisher.com
8
LabKey Server logo

LabKey Server

enterprise

Biomedical data management platform with biorepository features for sample tracking, assay data, and study integration.

Overall Rating8.1/10
Features
9.2/10
Ease of Use
6.4/10
Value
7.6/10
Standout Feature

Visual sample pedigree viewer that maps complex parent-child aliquot relationships and transformations

LabKey Server is a robust, web-based platform for managing scientific data in life sciences, with a dedicated Biorepository module for tracking biological samples from collection through storage and distribution. It supports inventory management, aliquot tracking, metadata annotation, quality control workflows, and integration with assays and studies. The system excels in handling complex relationships between samples and enables advanced querying, reporting, and compliance features for regulated environments.

Pros

  • Highly customizable with schema-driven data models and ETL pipelines for biorepository workflows
  • Excellent integration with assays, ELNs, and external systems via APIs and standardized formats
  • Strong audit trails, chain-of-custody tracking, and compliance tools for GLP/GxP environments

Cons

  • Steep learning curve and complex initial setup requiring technical expertise
  • Interface can feel dated and less intuitive for non-technical users
  • Enterprise licensing can be costly for smaller organizations

Best For

Large research institutions, biobanks, and pharma companies needing scalable, highly customizable sample management integrated with broader research data platforms.

Pricing

Free community edition; enterprise edition quote-based, typically starting at $20,000+ annually depending on users and modules.

9
CloudLIMS logo

CloudLIMS

enterprise

Cloud-based LIMS for biorepositories offering sample management, workflow automation, and regulatory compliance tools.

Overall Rating8.1/10
Features
8.5/10
Ease of Use
7.9/10
Value
7.7/10
Standout Feature

Advanced sample pedigree visualization and automated derivative tracking

CloudLIMS is a cloud-based Laboratory Information Management System (LIMS) specifically designed for biorepositories, offering comprehensive sample accessioning, tracking, inventory management, and chain-of-custody features. It supports biological sample lifecycle management, including aliquoting, derivatives, and disposal, with customizable workflows and regulatory compliance tools like 21 CFR Part 11 and ISO 17025. The platform enables real-time collaboration, instrument integrations, and reporting to streamline biorepository operations.

Pros

  • Robust sample pedigree tracking and aliquoting for complex biorepository workflows
  • Strong regulatory compliance features including audit trails and electronic signatures
  • Cloud scalability with mobile access and no hardware requirements

Cons

  • Customization requires technical setup and can have a learning curve
  • Limited advanced analytics or AI-driven insights compared to top competitors
  • Integrations with niche biorepository instruments may need custom development

Best For

Small to mid-sized biorepositories needing a compliant, scalable LIMS for sample management without on-premise infrastructure.

Pricing

Custom quote-based pricing, typically starting at $500/month for basic plans, scaling with users, storage, and enterprise features.

Visit CloudLIMScloudlims.com
10
Matrix Gemini LIMS logo

Matrix Gemini LIMS

enterprise

Configurable LIMS solution with modules for biobanking, sample storage, and inventory control in life sciences.

Overall Rating7.8/10
Features
8.5/10
Ease of Use
7.0/10
Value
7.5/10
Standout Feature

Point-and-click configuration engine for building bespoke biorepository workflows without coding

Matrix Gemini LIMS from Autoscribe Informatics is a highly configurable laboratory information management system tailored for biorepositories, enabling end-to-end sample lifecycle management from intake to disposal. It excels in tracking biological specimens, managing inventory across freezers and storage systems, and ensuring regulatory compliance with features like audit trails and chain-of-custody protocols. The software supports custom workflows and instrument integrations, making it adaptable for diverse biorepository operations.

Pros

  • Highly configurable with no-code tools for custom biorepository workflows
  • Strong compliance and audit trail features for regulated environments
  • Scalable inventory management with integration to storage systems

Cons

  • Steep initial learning curve due to extensive customization options
  • Pricing can be high for smaller labs without volume discounts
  • Limited pre-built templates specifically for niche biorepository protocols

Best For

Mid-sized biorepositories requiring a flexible, scalable LIMS that can be customized to unique sample management needs without heavy programming.

Pricing

Quote-based pricing; typically starts at $25,000+ for perpetual licenses with annual maintenance fees around 20% of license cost.

Visit Matrix Gemini LIMSautoscribeinformatics.com

Conclusion

The array of biorepository software tools examined—from specialized cloud platforms to open-source solutions—demonstrates the diversity of options for managing samples, ensuring compliance, and optimizing workflows. FreezerPro leads as the top choice with its tailored design for biorepositories, while Mosaic and OpenSpecimen excel as strong alternatives: Mosaic for comprehensive compound and sample management, and OpenSpecimen for open-source flexibility and regulatory alignment. These tools collectively cater to varied needs, making efficient biorepository operations accessible to many.

FreezerPro logo
Our Top Pick
FreezerPro

Ready to elevate your biorepository management? Start with FreezerPro, the top-ranked tool, to experience specialized tracking and inventory management that drives efficiency and reliability in life sciences research.